RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 CHFRQ96EP1 664 aa15.52■□□□□ 0.08
PRPF40A-211ENST00000493468 FAM83CQ9BQN1 747 aa15.52■□□□□ 0.08
PRPF40A-211ENST00000493468 TARS2Q9BW92 718 aaKnown RBP15.52■□□□□ 0.08
PRPF40A-211ENST00000493468 BHMT2Q9H2M3 363 aa15.52■□□□□ 0.08
PRPF40A-211ENST00000493468 TUBGCP4Q9UGJ1 667 aa15.52■□□□□ 0.08
PRPF40A-211ENST00000493468 EBF1Q9UH73 591 aa15.52■□□□□ 0.08
PRPF40A-211ENST00000493468 MYH11P35749 1972 aa15.52■□□□□ 0.07
PRPF40A-211ENST00000493468 ANK1P16157 1881 aa15.52■□□□□ 0.07
PRPF40A-211ENST00000493468 THADAQ6YHU6 1953 aa15.51■□□□□ 0.07
PRPF40A-211ENST00000493468 ASCC3Q8N3C0 2202 aaKnown RBP15.51■□□□□ 0.07
PRPF40A-211ENST00000493468 SOBPA7XYQ1 873 aa15.51■□□□□ 0.07
PRPF40A-211ENST00000493468 RNF40O75150 1001 aa15.51■□□□□ 0.07
PRPF40A-211ENST00000493468 TYMPP19971 482 aa15.51■□□□□ 0.07
PRPF40A-211ENST00000493468 DRD1P21728 446 aa15.51■□□□□ 0.07
PRPF40A-211ENST00000493468 CDC25CP30307 473 aa15.51■□□□□ 0.07
PRPF40A-211ENST00000493468 PEX3P56589 373 aa15.51■□□□□ 0.07
PRPF40A-211ENST00000493468 CREB5Q02930 508 aa15.51■□□□□ 0.07
PRPF40A-211ENST00000493468 DMP1Q13316 513 aaPredicted RBP15.51■□□□□ 0.07
PRPF40A-211ENST00000493468 SLC10A6Q3KNW5 377 aa15.51■□□□□ 0.07
PRPF40A-211ENST00000493468 FBXO43Q4G163 708 aa15.51■□□□□ 0.07
PRPF40A-211ENST00000493468 USP37Q86T82 979 aa15.51■□□□□ 0.07
PRPF40A-211ENST00000493468 C11orf74Q86VG3 221 aa15.51■□□□□ 0.07
PRPF40A-211ENST00000493468 GPIHBP1Q8IV16 184 aa15.51■□□□□ 0.07
PRPF40A-211ENST00000493468 TCHPQ9BT92 498 aa15.51■□□□□ 0.07
PRPF40A-211ENST00000493468 PLEKHA5Q9HAU0 1116 aa15.51■□□□□ 0.07
PRPF40A-211ENST00000493468 HPS4Q9NQG7 708 aa15.51■□□□□ 0.07
PRPF40A-211ENST00000493468 RBM19Q9Y4C8 960 aaKnown RBP15.51■□□□□ 0.07
PRPF40A-211ENST00000493468 ABCA7Q8IZY2 2146 aa15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 CCDC169A6NNP5 214 aa15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 OR52Z1P0C646 297 aa15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 CYP3A5P20815 502 aa15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 MCM7P33993 719 aa15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 RUNX3Q13761 415 aa15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 NOLC1Q14978 699 aaKnown RBP eCLIP15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 LRSAM1Q6UWE0 723 aa15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 SYT13Q7L8C5 426 aa15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 ATAD1Q8NBU5 361 aa15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 EXOC4Q96A65 974 aa15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 GCNAQ96QF7 691 aa15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 HHIPQ96QV1 700 aa15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 SCNM1Q9BWG6 230 aa15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 C17orf75Q9HAS0 396 aa15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 IL21Q9HBE4 155 aa15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 POLD4Q9HCU8 107 aa15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 TMEM9BQ9NQ34 198 aa15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 GKN1Q9NS71 199 aa15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 TIMM13Q9Y5L4 95 aaPredicted RBP15.5■□□□□ 0.07
PRPF40A-211ENST00000493468 NBEAQ8NFP9 2946 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 TOM1L1O75674 476 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 LARGE1O95461 756 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 APBB3O95704 486 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 EGFP01133 1207 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 SPINK2P20155 84 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 CYP4F8P98187 520 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 VEPH1Q14D04 833 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 ZBTB6Q15916 424 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 OVOS1Q6IE37 1185 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 CMTM8Q8IZV2 173 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 DAW1Q8N136 415 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 TTC9BQ8N6N2 239 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 ZCCHC14Q8WYQ9 949 aaKnown RBP15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 ACDQ96AP0 544 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 DRC1Q96MC2 740 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 KIF9Q9HAQ2 790 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 KMT5AQ9NQR1 393 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 SLC27A5Q9Y2P5 690 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 TNRC6BQ9UPQ9 1833 aaKnown RBP15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 PCNX2A6NKB5 2137 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 PTPRDP23468 1912 aa15.49■□□□□ 0.07
PRPF40A-211ENST00000493468 OTOL1A6NHN0 477 aaPredicted RBP15.48■□□□□ 0.07
PRPF40A-211ENST00000493468 KHNYNO15037 678 aaKnown RBP15.48■□□□□ 0.07
PRPF40A-211ENST00000493468 DTNBO60941 627 aa15.48■□□□□ 0.07
PRPF40A-211ENST00000493468 PAX3P23760 479 aa15.48■□□□□ 0.07
PRPF40A-211ENST00000493468 DDX6P26196 483 aaKnown RBP eCLIP15.48■□□□□ 0.07
PRPF40A-211ENST00000493468 TUFMP49411 452 aaKnown RBP15.48■□□□□ 0.07
PRPF40A-211ENST00000493468 ECM1Q16610 540 aa15.48■□□□□ 0.07
PRPF40A-211ENST00000493468 PMS2CLQ68D20 193 aa15.48■□□□□ 0.07
PRPF40A-211ENST00000493468 SLC46A2Q9BY10 475 aa15.48■□□□□ 0.07
PRPF40A-211ENST00000493468 TBX20Q9UMR3 447 aa15.48■□□□□ 0.07
PRPF40A-211ENST00000493468 UBQLN1Q9UMX0 589 aaKnown RBP15.48■□□□□ 0.07
PRPF40A-211ENST00000493468 LHX6Q9UPM6 363 aa15.48■□□□□ 0.07
PRPF40A-211ENST00000493468 NEUROG3Q9Y4Z2 214 aa15.48■□□□□ 0.07
PRPF40A-211ENST00000493468 TTC26A0AVF1 554 aa15.47■□□□□ 0.07
PRPF40A-211ENST00000493468 CDX4O14627 284 aaPredicted RBP15.47■□□□□ 0.07
PRPF40A-211ENST00000493468 XPOTO43592 962 aaKnown RBP15.47■□□□□ 0.07
PRPF40A-211ENST00000493468 HIP1RO75146 1068 aa15.47■□□□□ 0.07
PRPF40A-211ENST00000493468 SOAT2O75908 522 aa15.47■□□□□ 0.07
PRPF40A-211ENST00000493468 TOP3BO95985 862 aaKnown RBP15.47■□□□□ 0.07
PRPF40A-211ENST00000493468 CXCL8P10145 99 aa15.47■□□□□ 0.07
PRPF40A-211ENST00000493468 HARSP12081 509 aaKnown RBP15.47■□□□□ 0.07
PRPF40A-211ENST00000493468 ATF6P18850 670 aa15.47■□□□□ 0.07
PRPF40A-211ENST00000493468 CCT6AP40227 531 aaKnown RBP15.47■□□□□ 0.07
PRPF40A-211ENST00000493468 FXR2P51116 673 aaKnown RBP eCLIP15.47■□□□□ 0.075e-9■■■□□ 17
PRPF40A-211ENST00000493468 RING1Q06587 406 aa15.47■□□□□ 0.07
PRPF40A-211ENST00000493468 MCL1Q07820 350 aa15.47■□□□□ 0.07
PRPF40A-211ENST00000493468 MAPK7Q13164 816 aa15.47■□□□□ 0.07
PRPF40A-211ENST00000493468 TRIM29Q14134 588 aa15.47■□□□□ 0.07
PRPF40A-211ENST00000493468 DMC1Q14565 340 aa15.47■□□□□ 0.07
PRPF40A-211ENST00000493468 ITPR1Q14643 2758 aa15.47■□□□□ 0.07
PRPF40A-211ENST00000493468 ARMCX5Q6P1M9 558 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms