RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 INHBCP55103 352 aa7.5□□□□□ -1.21
USP40-213ENST00000483216 FPGSQ05932 587 aa7.5□□□□□ -1.21
USP40-213ENST00000483216 GBX1Q14549 363 aa7.5□□□□□ -1.21
USP40-213ENST00000483216 HLXQ14774 488 aaPredicted RBP7.5□□□□□ -1.21
USP40-213ENST00000483216 LAIR1Q6GTX8 287 aa7.5□□□□□ -1.21
USP40-213ENST00000483216 Q6YL49 198 aa7.5□□□□□ -1.21
USP40-213ENST00000483216 WDR75Q8IWA0 830 aaKnown RBP7.5□□□□□ -1.21
USP40-213ENST00000483216 LINC00476Q8WZB0 136 aa7.5□□□□□ -1.21
USP40-213ENST00000483216 FAM204AQ9H8W3 233 aa7.5□□□□□ -1.21
USP40-213ENST00000483216 PIH1D1Q9NWS0 290 aaKnown RBP7.5□□□□□ -1.21
USP40-213ENST00000483216 STAP2Q9UGK3 403 aa7.5□□□□□ -1.21
USP40-213ENST00000483216 CPA4Q9UI42 421 aa7.5□□□□□ -1.21
USP40-213ENST00000483216 L1RE1Q9UN81 338 aa7.5□□□□□ -1.21
USP40-213ENST00000483216 MED16Q9Y2X0 877 aa7.5□□□□□ -1.21
USP40-213ENST00000483216 TRGV11A0A075B6L2 103 aa7.49□□□□□ -1.21
USP40-213ENST00000483216 CAPN8A6NHC0 703 aa7.49□□□□□ -1.21
USP40-213ENST00000483216 SOAT2O75908 522 aa7.49□□□□□ -1.21
USP40-213ENST00000483216 KIF20AO95235 890 aa7.49□□□□□ -1.21
USP40-213ENST00000483216 HKR1P10072 659 aa7.49□□□□□ -1.21
USP40-213ENST00000483216 ATF3P18847 181 aa7.49□□□□□ -1.21
USP40-213ENST00000483216 FDXRP22570 491 aa7.49□□□□□ -1.21
USP40-213ENST00000483216 KCNJ5P48544 419 aa7.49□□□□□ -1.21
USP40-213ENST00000483216 USP14P54578 494 aa7.49□□□□□ -1.21
USP40-213ENST00000483216 MICALCLQ6ZW33 695 aa7.49□□□□□ -1.21
USP40-213ENST00000483216 MAEAQ7L5Y9 396 aa7.49□□□□□ -1.21
USP40-213ENST00000483216 CHST15Q7LFX5 561 aaPredicted RBP7.49□□□□□ -1.21
USP40-213ENST00000483216 MRGPRGQ86SM5 289 aa7.49□□□□□ -1.21
USP40-213ENST00000483216 LNX2Q8N448 690 aa7.49□□□□□ -1.21
USP40-213ENST00000483216 CELF5Q8N6W0 485 aaKnown RBP7.49□□□□□ -1.21
USP40-213ENST00000483216 ZMAT3Q9HA38 289 aaKnown RBP7.49□□□□□ -1.21
USP40-213ENST00000483216 INTS13Q9NVM9 706 aa7.49□□□□□ -1.21
USP40-213ENST00000483216 MRPS18AQ9NVS2 196 aaKnown RBP7.49□□□□□ -1.21
USP40-213ENST00000483216 OBP2AQ9NY56 170 aa7.49□□□□□ -1.21
USP40-213ENST00000483216 CHPF2Q9P2E5 772 aa7.49□□□□□ -1.21
USP40-213ENST00000483216 TESQ9UGI8 421 aaKnown RBP7.49□□□□□ -1.21
USP40-213ENST00000483216 DDX20Q9UHI6 824 aaKnown RBP7.49□□□□□ -1.21
USP40-213ENST00000483216 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.49□□□□□ -1.21
USP40-213ENST00000483216 SPATA31A3Q5VYP0 1347 aa7.49□□□□□ -1.21
USP40-213ENST00000483216 A0A1W2PPL8 197 aa7.48□□□□□ -1.21
USP40-213ENST00000483216 TOR1BO14657 336 aa7.48□□□□□ -1.21
USP40-213ENST00000483216 DNAJB5O75953 348 aa7.48□□□□□ -1.21
USP40-213ENST00000483216 PIM1P11309 404 aaPredicted RBP7.48□□□□□ -1.21
USP40-213ENST00000483216 TGFB2P61812 414 aa7.48□□□□□ -1.21
USP40-213ENST00000483216 MC2RQ01718 297 aa7.48□□□□□ -1.21
USP40-213ENST00000483216 CD300EQ496F6 205 aaPredicted RBP7.48□□□□□ -1.21
USP40-213ENST00000483216 FAM160B1Q5W0V3 765 aa7.48□□□□□ -1.21
USP40-213ENST00000483216 SRGAP1Q7Z6B7 1085 aa7.48□□□□□ -1.21
USP40-213ENST00000483216 ADGRG5Q8IZF4 528 aa7.48□□□□□ -1.21
USP40-213ENST00000483216 PSD4Q8NDX1 1056 aa7.48□□□□□ -1.21
USP40-213ENST00000483216 TMEM125Q96AQ2 219 aa7.48□□□□□ -1.21
USP40-213ENST00000483216 PTCD3Q96EY7 689 aaKnown RBP7.48□□□□□ -1.21
USP40-213ENST00000483216 NT5C1BQ96P26 610 aa7.48□□□□□ -1.21
USP40-213ENST00000483216 TTPALQ9BTX7 342 aa7.48□□□□□ -1.21
USP40-213ENST00000483216 PRDM11Q9NQV5 511 aa7.48□□□□□ -1.21
USP40-213ENST00000483216 MAST3O60307 1309 aa7.48□□□□□ -1.21
USP40-213ENST00000483216 ABCC9O60706 1549 aa7.47□□□□□ -1.21
USP40-213ENST00000483216 A6NNZ2 444 aa7.47□□□□□ -1.21
USP40-213ENST00000483216 M0QYG6 137 aa7.47□□□□□ -1.21
USP40-213ENST00000483216 PHGDHO43175 533 aaKnown RBP7.47□□□□□ -1.21
USP40-213ENST00000483216 RAMP2O60895 175 aa7.47□□□□□ -1.21
USP40-213ENST00000483216 HRGP04196 525 aa7.47□□□□□ -1.21
USP40-213ENST00000483216 SRGNP10124 158 aa7.47□□□□□ -1.21
USP40-213ENST00000483216 NPR1P16066 1061 aa7.47□□□□□ -1.21
USP40-213ENST00000483216 GATA3P23771 443 aa7.47□□□□□ -1.21
USP40-213ENST00000483216 TOB1P50616 345 aaPredicted RBP7.47□□□□□ -1.21
USP40-213ENST00000483216 GRM3Q14832 879 aa7.47□□□□□ -1.21
USP40-213ENST00000483216 TAF2Q6P1X5 1199 aa7.47□□□□□ -1.21
USP40-213ENST00000483216 SLC30A10Q6XR72 485 aa7.47□□□□□ -1.21
USP40-213ENST00000483216 SUPT20HQ8NEM7 779 aa7.47□□□□□ -1.21
USP40-213ENST00000483216 KBTBD7Q8WVZ9 684 aa7.47□□□□□ -1.21
USP40-213ENST00000483216 SNX19Q92543 992 aa7.47□□□□□ -1.21
USP40-213ENST00000483216 Q96MF0 132 aa7.47□□□□□ -1.21
USP40-213ENST00000483216 TOR3AQ9H497 397 aa7.47□□□□□ -1.21
USP40-213ENST00000483216 ATP6V0A4Q9HBG4 840 aa7.47□□□□□ -1.21
USP40-213ENST00000483216 CASS4Q9NQ75 786 aa7.47□□□□□ -1.21
USP40-213ENST00000483216 PLEKHM1Q9Y4G2 1056 aa7.47□□□□□ -1.21
USP40-213ENST00000483216 EPN1Q9Y6I3 576 aaPredicted RBP7.47□□□□□ -1.21
USP40-213ENST00000483216 ZBED1O96006 694 aa7.46□□□□□ -1.22
USP40-213ENST00000483216 GCP02774 474 aa7.46□□□□□ -1.22
USP40-213ENST00000483216 THP07101 528 aa7.46□□□□□ -1.22
USP40-213ENST00000483216 ARFIP2P53365 341 aa7.46□□□□□ -1.22
USP40-213ENST00000483216 LLGL1Q15334 1064 aa7.46□□□□□ -1.22
USP40-213ENST00000483216 PREPLQ4J6C6 727 aaPredicted RBP7.46□□□□□ -1.22
USP40-213ENST00000483216 HECTD2Q5U5R9 776 aa7.46□□□□□ -1.22
USP40-213ENST00000483216 SWSAP1Q6NVH7 229 aa7.46□□□□□ -1.22
USP40-213ENST00000483216 PCSK4Q6UW60 755 aa7.46□□□□□ -1.22
USP40-213ENST00000483216 PCSK9Q8NBP7 692 aaKnown RBP7.46□□□□□ -1.22
USP40-213ENST00000483216 BEND2Q8NDZ0 799 aa7.46□□□□□ -1.22
USP40-213ENST00000483216 FAM46DQ8NEK8 389 aa7.46□□□□□ -1.22
USP40-213ENST00000483216 SSH3Q8TE77 659 aa7.46□□□□□ -1.22
USP40-213ENST00000483216 HEPHQ9BQS7 1158 aa7.46□□□□□ -1.22
USP40-213ENST00000483216 MRIQ9BWK5 157 aa7.46□□□□□ -1.22
USP40-213ENST00000483216 TRIM54Q9BYV2 358 aa7.46□□□□□ -1.22
USP40-213ENST00000483216 PACSIN3Q9UKS6 424 aa7.46□□□□□ -1.22
USP40-213ENST00000483216 DMTF1Q9Y222 760 aa7.46□□□□□ -1.22
USP40-213ENST00000483216 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.46□□□□□ -1.22
USP40-213ENST00000483216 MARCH6O60337 910 aa7.45□□□□□ -1.22
USP40-213ENST00000483216 VPS4BO75351 444 aa7.45□□□□□ -1.22
USP40-213ENST00000483216 RHOBTB3O94955 611 aa7.45□□□□□ -1.22
USP40-213ENST00000483216 UNC5CO95185 931 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms