RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 PLVAPQ9BX97 442 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 SHCBP1LQ9BZQ2 653 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 DNAAF2Q9NVR5 837 aaKnown RBP12.34□□□□□ -0.43
CPSF3-202ENST00000460593 PLCB3Q01970 1234 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 CAV1Q03135 178 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 GABPAQ06546 454 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 TCP10Q12799 353 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 RASA2Q15283 850 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 ANKRD22Q5VYY1 191 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 ACAD10Q6JQN1 1059 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 PTF1AQ7RTS3 328 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 TAS1R2Q8TE23 839 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 SKA1Q96BD8 255 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 KIFC3Q9BVG8 833 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 GPRC5CQ9NQ84 441 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 UVRAGQ9P2Y5 699 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 UMODL1Q5DID0 1318 aa12.33□□□□□ -0.43
CPSF3-202ENST00000460593 ATRNL1Q5VV63 1379 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 ZWINTO95229 277 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 RARBP10826 455 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 DYNLT1P63172 113 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 CDK16Q00536 496 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 DSG1Q02413 1049 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 CETN1Q12798 172 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 MORC4Q8TE76 937 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 SMYD3Q9H7B4 428 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 HSPBP1Q9NZL4 362 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 SERPINB13Q9UIV8 391 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 CLUHO75153 1309 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 DCAF8L1A6NGE4 600 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 C6orf229H3BNL8 230 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 TXNDC9O14530 226 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 POTEJP0CG39 1038 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 Q4G0T1 1027 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 PABPC1LQ4VXU2 614 aaKnown RBP12.33□□□□□ -0.44
CPSF3-202ENST00000460593 GPATCH4Q5T3I0 446 aaKnown RBP12.33□□□□□ -0.44
CPSF3-202ENST00000460593 SLFN13Q68D06 897 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 OTOP1Q7RTM1 612 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 APLFQ8IW19 511 aaPredicted RBP12.33□□□□□ -0.44
CPSF3-202ENST00000460593 GSTCDQ8NEC7 633 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 DDX1Q92499 740 aaKnown RBP12.33□□□□□ -0.44
CPSF3-202ENST00000460593 ZWILCHQ9H900 591 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 PSMC3IPQ9P2W1 217 aaPredicted RBP12.33□□□□□ -0.44
CPSF3-202ENST00000460593 PPARGC1AQ9UBK2 798 aaKnown RBP12.33□□□□□ -0.44
CPSF3-202ENST00000460593 ZNF212Q9UDV6 495 aa12.33□□□□□ -0.44
CPSF3-202ENST00000460593 DNALI1O14645 258 aaPredicted RBP12.32□□□□□ -0.44
CPSF3-202ENST00000460593 CFBP00751 764 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 RXRBP28702 533 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 GTF2IP78347 998 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 TMEM62Q0P6H9 643 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 NFIAQ12857 509 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 ZRSR2Q15696 482 aaKnown RBP12.32□□□□□ -0.44
CPSF3-202ENST00000460593 SFT2D3Q587I9 215 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 FNBP1LQ5T0N5 605 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 MEX3CQ5U5Q3 659 aaKnown RBP12.32□□□□□ -0.44
CPSF3-202ENST00000460593 C1orf146Q5VVC0 180 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 TXNRD3NBQ6F5E7 133 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 NLRX1Q86UT6 975 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 SHC3Q92529 594 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 OXNAD1Q96HP4 312 aaPredicted RBP12.32□□□□□ -0.44
CPSF3-202ENST00000460593 PAFAH2Q99487 392 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 POLR3CQ9BUI4 534 aaPredicted RBP12.32□□□□□ -0.44
CPSF3-202ENST00000460593 CHCHD3Q9NX63 227 aaKnown RBP12.32□□□□□ -0.44
CPSF3-202ENST00000460593 NDE1Q9NXR1 346 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 CHMP2BQ9UQN3 213 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 SPATA31A5Q5VU36 1347 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 SPATA31A6Q5VVP1 1343 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 SPATA31A7Q8IWB4 1347 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 RIMBP2O15034 1052 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 DLDP09622 509 aaKnown RBP12.32□□□□□ -0.44
CPSF3-202ENST00000460593 GLRA2P23416 452 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 CDK7P50613 346 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 HIRAP54198 1017 aaPredicted RBP12.32□□□□□ -0.44
CPSF3-202ENST00000460593 TCEAL1Q15170 157 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 DDB1Q16531 1140 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.32□□□□□ -0.44
CPSF3-202ENST00000460593 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.32□□□□□ -0.44
CPSF3-202ENST00000460593 MCOLN2Q8IZK6 566 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 KLHL23Q8NBE8 558 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 HELQQ8TDG4 1101 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 MPP4Q96JB8 637 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 NAP1L4Q99733 375 aaKnown RBP12.32□□□□□ -0.44
CPSF3-202ENST00000460593 WDR83Q9BRX9 315 aaKnown RBP12.32□□□□□ -0.44
CPSF3-202ENST00000460593 GINM1Q9NU53 330 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 SLC7A8Q9UHI5 535 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 PCDHAC2Q9Y5I4 1007 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 MYOCOSA0A1B0GUC4 107 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 FAM155BO75949 473 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 ALDH18A1P54886 795 aaKnown RBP12.32□□□□□ -0.44
CPSF3-202ENST00000460593 BPIFB4P59827 614 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 TTLL12Q14166 644 aaPredicted RBP12.32□□□□□ -0.44
CPSF3-202ENST00000460593 CCNG2Q16589 344 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 CLEC16AQ2KHT3 1053 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 HSF5Q4G112 596 aaPredicted RBP12.32□□□□□ -0.44
CPSF3-202ENST00000460593 SLC10A5Q5PT55 438 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 CLEC4GQ6UXB4 293 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 RNF111Q6ZNA4 994 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 SYDE1Q6ZW31 735 aaPredicted RBP12.32□□□□□ -0.44
CPSF3-202ENST00000460593 SPATA24Q86W54 205 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 CCDC124Q96CT7 223 aaKnown RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms