RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 TRIM11Q96F44 468 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 DDX27Q96GQ7 796 aaKnown RBP11.22□□□□□ -0.61
TCOF1-204ENST00000427724 ZIM3Q96PE6 472 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 INTS9Q9NV88 658 aaKnown RBP11.22□□□□□ -0.61
TCOF1-204ENST00000427724 SNX24Q9Y343 169 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 LRRC10BA6NIK2 292 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 SART1O43290 800 aaKnown RBP11.22□□□□□ -0.61
TCOF1-204ENST00000427724 SKAP2O75563 359 aaPredicted RBP11.22□□□□□ -0.61
TCOF1-204ENST00000427724 PPP1R37O75864 691 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 FXR2P51116 673 aaKnown RBP eCLIP11.22□□□□□ -0.619e-7■■■■□ 22.9
TCOF1-204ENST00000427724 SEMA3FQ13275 785 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 SLC18A3Q16572 532 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 TSNAXIP1Q2TAA8 658 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 NAIF1Q69YI7 327 aaPredicted RBP11.22□□□□□ -0.61
TCOF1-204ENST00000427724 DDX42Q86XP3 938 aaKnown RBP eCLIP11.22□□□□□ -0.61
TCOF1-204ENST00000427724 OR2W6PQ8NHA6 318 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 FBXO32Q969P5 355 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 KLHL29Q96CT2 875 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 CCT8L2Q96SF2 557 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 DUSP9Q99956 384 aaKnown RBP11.22□□□□□ -0.61
TCOF1-204ENST00000427724 IPO11Q9UI26 975 aaKnown RBP11.22□□□□□ -0.61
TCOF1-204ENST00000427724 DOLKQ9UPQ8 538 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 PDXKO00764 312 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 ITGB5P18084 799 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 KRT15P19012 456 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 SLC9A1P19634 815 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 MLH1P40692 756 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 ATXN3P54252 364 aaPredicted RBP11.22□□□□□ -0.61
TCOF1-204ENST00000427724 ZNF200P98182 395 aaPredicted RBP11.22□□□□□ -0.61
TCOF1-204ENST00000427724 ORC1Q13415 861 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 IL17AQ16552 155 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 SYT2Q8N9I0 419 aaPredicted RBP11.22□□□□□ -0.61
TCOF1-204ENST00000427724 ASIC4Q96FT7 647 aa11.22□□□□□ -0.61
TCOF1-204ENST00000427724 SSU72P8A0A1W2PR75 194 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 GRAP2O75791 330 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 HLA-DRAP01903 254 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 MMP3P08254 477 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 RPL10AP62906 217 aaKnown RBP11.21□□□□□ -0.61
TCOF1-204ENST00000427724 GRB10Q13322 594 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 CUL1Q13616 776 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 MAPRE1Q15691 268 aaKnown RBP11.21□□□□□ -0.61
TCOF1-204ENST00000427724 PPP2R5EQ16537 467 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 NFE2Q16621 373 aaPredicted RBP11.21□□□□□ -0.61
TCOF1-204ENST00000427724 C10orf76Q5T2E6 689 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 NPLOC4Q8TAT6 608 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 ZNF473Q8WTR7 871 aaKnown RBP11.21□□□□□ -0.61
TCOF1-204ENST00000427724 ANKS1AQ92625 1134 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 ARHGEF2Q92974 986 aaKnown RBP11.21□□□□□ -0.61
TCOF1-204ENST00000427724 MED15Q96RN5 788 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 RGPD1P0DJD0 1748 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 EML1O00423 815 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 FAM200BP0CF97 657 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 MAGOHP61326 146 aaKnown RBP11.21□□□□□ -0.61
TCOF1-204ENST00000427724 DR1Q01658 176 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 PRPSAP1Q14558 356 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 DRAP1Q14919 205 aaPredicted RBP11.21□□□□□ -0.61
TCOF1-204ENST00000427724 DAGLBQ8NCG7 672 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 PPFIBP2Q8ND30 876 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 SPATA20Q8TB22 786 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 ARL8AQ96BM9 186 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 CIPCQ9C0C6 399 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 MTMR12Q9C0I1 747 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 VPS37BQ9H9H4 285 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 DNAJC17Q9NVM6 304 aaKnown RBP11.21□□□□□ -0.61
TCOF1-204ENST00000427724 MRPS23Q9Y3D9 190 aaKnown RBP11.21□□□□□ -0.61
TCOF1-204ENST00000427724 MAD1L1Q9Y6D9 718 aa11.21□□□□□ -0.61
TCOF1-204ENST00000427724 SOWAHBA6NEL2 793 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 AP1G2O75843 785 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 NOP14P78316 857 aaKnown RBP11.21□□□□□ -0.62
TCOF1-204ENST00000427724 AMPD2Q01433 879 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 TAF11Q15544 211 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 SUGP1Q8IWZ8 645 aaKnown RBP11.21□□□□□ -0.62
TCOF1-204ENST00000427724 ABRAQ8N0Z2 381 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 MMGT1Q8N4V1 131 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 ATP6V1G3Q96LB4 118 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 DDX50Q9BQ39 737 aaKnown RBP11.21□□□□□ -0.62
TCOF1-204ENST00000427724 ZNF214Q9UL59 606 aaPredicted RBP11.21□□□□□ -0.62
TCOF1-204ENST00000427724 A0A087X0T9 212 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 A0A1W2PQJ5 194 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 CCDC188H7C350 402 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 MEIS2O14770 477 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 EFCAB14O75071 495 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 RECQL4O94761 1208 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 KRT1P04264 644 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 FAM228BP0C875 321 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 LSP1P33241 339 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 TRIP13Q15645 432 aaPredicted RBP11.21□□□□□ -0.62
TCOF1-204ENST00000427724 TRIM60Q495X7 471 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 LDLRAD1Q5T700 205 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 BTNL9Q6UXG8 535 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 DNAAF5Q86Y56 855 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 KIAA0895Q8NCT3 520 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 HVCN1Q96D96 273 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 ZIC5Q96T25 663 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 EDEM3Q9BZQ6 932 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 FBXL5Q9UKA1 691 aa11.21□□□□□ -0.62
TCOF1-204ENST00000427724 I3L4J1 428 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 PDE2AO00408 941 aaPredicted RBP11.2□□□□□ -0.62
TCOF1-204ENST00000427724 EXTL3O43909 919 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 SPATA31D3P0C874 917 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms