RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 CBWD2Q8IUF1 395 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 TTC13Q8NBP0 860 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 LRRC8CQ8TDW0 803 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 ZNF483Q8TF39 744 aaPredicted RBP6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 FNIP1Q8TF40 1166 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 PRCCQ92733 491 aaPredicted RBP6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 PTCD3Q96EY7 689 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 MASTLQ96GX5 879 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 SLITRK1Q96PX8 696 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 TRAPPC9Q96Q05 1148 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 SH3GL3Q99963 347 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 FRMD8Q9BZ67 464 aaPredicted RBP6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 ACSS3Q9H6R3 686 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 PNPLA8Q9NP80 782 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 DDX43Q9NXZ2 648 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 ARHGAP28Q9P2N2 729 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 ANKFY1Q9P2R3 1169 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 STOML1Q9UBI4 398 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 R3HDM2Q9Y2K5 976 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 LRCH1Q9Y2L9 728 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 SNCAIPQ9Y6H5 919 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 CLUHO75153 1309 aa6.06□□□□□ -1.44
CCDC88A-203ENST00000412148 WDR64B1ANS9 1081 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 C4BPAP04003 597 aaKnown RBP6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 RPSAP08865 295 aaKnown RBP6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 TROVE2P10155 538 aaKnown RBP eCLIP6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 PIM1P11309 404 aaPredicted RBP6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 NEFHP12036 1026 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 NPTX2P47972 431 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 RAP1GDS1P52306 607 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 RPL26P61254 145 aaKnown RBP6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 JAG1P78504 1218 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 SLC18A2Q05940 514 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 NFX1Q12986 1120 aaKnown RBP6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 DMP1Q13316 513 aaPredicted RBP6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 PIGHQ14442 188 aaPredicted RBP6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 TAF11Q15544 211 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 TBCCQ15814 346 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 CIAPIN1Q6FI81 312 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 ANO7Q6IWH7 933 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 STYK1Q6J9G0 422 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 CCDC174Q6PII3 467 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 C4orf50Q6ZRC1 276 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 CLNKQ7Z7G1 428 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 LDHDQ86WU2 507 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 VSIG1Q86XK7 387 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 SPICE1Q8N0Z3 855 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 ANKRD42Q8N9B4 389 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 MCPH1Q8NEM0 835 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 FEZF2Q8TBJ5 459 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 TAS1R2Q8TE23 839 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 CLEC4DQ8WXI8 215 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 SKA1Q96BD8 255 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 ERP27Q96DN0 273 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 ZNF333Q96JL9 665 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 BTBD6Q96KE9 485 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 PRDM16Q9HAZ2 1276 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 SPATS2LQ9NUQ6 558 aaKnown RBP6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 RABGEF1Q9UJ41 708 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 MTO1Q9Y2Z2 717 aaKnown RBP6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 MGAMO43451 1857 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 TMEM191CA6NGB0 347 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 PLSCR1O15162 318 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 CHMP2AO43633 222 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 MAGEC1O60732 1142 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 STBD1O95210 358 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 CALB1P05937 261 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 TMEM191BP0C7N4 346 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 MMP8P22894 467 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 VHLP40337 213 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 ACAP1Q15027 740 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 P3H1Q32P28 736 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 OTUD6AQ7L8S5 288 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 OTOAQ7RTW8 1153 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 ADGRG6Q86SQ4 1221 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 CPNE8Q86YQ8 564 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 MFN1Q8IWA4 741 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 BANPQ8N9N5 519 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 ATP11CQ8NB49 1132 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 MTMR14Q8NCE2 650 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 GDAP1Q8TB36 358 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 FAM151AQ8WW52 585 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 LPAR1Q92633 364 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 ZNF75CPQ92670 426 aaPredicted RBP6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 SPDL1Q96EA4 605 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 SIKE1Q9BRV8 207 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 BTBD10Q9BSF8 475 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 KIAA1683Q9H0B3 1180 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 PCIF1Q9H4Z3 704 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 ZNF212Q9UDV6 495 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 ZBTB21Q9ULJ3 1066 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 PCDHGC3Q9UN70 934 aa6.05□□□□□ -1.44
CCDC88A-203ENST00000412148 hCG_1818297A0A087WSY0 165 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 A8MUI8 341 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 STAM2O75886 525 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 NEBLO76041 1014 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 LDHAP00338 332 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 LINGO3P0C6S8 592 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 GM2AP17900 193 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 SCNN1AP37088 669 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms