RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 APEX2Q9UBZ4 518 aa7.53□□□□□ -1.2
LIMA1-202ENST00000394943 GRM6O15303 877 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 TMEM191BP0C7N4 346 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 ALDH7A1P49419 539 aaKnown RBP7.52□□□□□ -1.21
LIMA1-202ENST00000394943 MYL6P60660 151 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 CUL2Q13617 745 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 TCEAL1Q15170 157 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 RAB41Q5JT25 222 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 RTP2Q5QGT7 225 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 FMNL3Q8IVF7 1028 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 TRMT2BQ96GJ1 504 aaKnown RBP7.52□□□□□ -1.21
LIMA1-202ENST00000394943 DZANK1Q9NVP4 752 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 AIPL1Q9NZN9 384 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 BARX2Q9UMQ3 279 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-202ENST00000394943 MYO16Q9Y6X6 1858 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 ZBBXA8MT70 800 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 AP5Z1O43299 807 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 ERVFC1P60507 584 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 GPM6BQ13491 265 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 PTPROQ16827 1216 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 INTS6LQ5JSJ4 861 aaKnown RBP7.52□□□□□ -1.21
LIMA1-202ENST00000394943 CEP135Q66GS9 1140 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 RSPO2Q6UXX9 243 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-202ENST00000394943 GBP6Q6ZN66 633 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 DDX1Q92499 740 aaKnown RBP7.52□□□□□ -1.21
LIMA1-202ENST00000394943 MYRFLQ96LU7 910 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 NSUN3Q9H649 340 aaKnown RBP7.52□□□□□ -1.21
LIMA1-202ENST00000394943 GOLGA2P5Q9HBQ8 144 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 ZDHHC7Q9NXF8 308 aa7.52□□□□□ -1.21
LIMA1-202ENST00000394943 HHLA1C9JL84 531 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 TRIM49P0CI25 452 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 TRIM49CP0CI26 452 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 P4HA1P13674 534 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 YWHAEP62258 255 aaKnown RBP7.51□□□□□ -1.21
LIMA1-202ENST00000394943 NOP14P78316 857 aaKnown RBP7.51□□□□□ -1.21
LIMA1-202ENST00000394943 KRT17Q04695 432 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 ADGRE1Q14246 886 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 VARS2Q5ST30 1063 aaKnown RBP7.51□□□□□ -1.21
LIMA1-202ENST00000394943 PAQR9Q6ZVX9 377 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 ARCQ7LC44 396 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-202ENST00000394943 ZNF677Q86XU0 584 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 STK32AQ8WU08 396 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 POF1BQ8WVV4 589 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 OVCA2Q8WZ82 227 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 SUSD6Q92537 303 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 C8orf48Q96LL4 319 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 HNRNPABQ99729 332 aaKnown RBP7.51□□□□□ -1.21
LIMA1-202ENST00000394943 STK33Q9BYT3 514 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 AFF4Q9UHB7 1163 aaKnown RBP7.51□□□□□ -1.21
LIMA1-202ENST00000394943 AGAP1Q9UPQ3 857 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 ZNF638Q14966 1978 aaKnown RBP7.51□□□□□ -1.21
LIMA1-202ENST00000394943 F8W810 466 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 HNRNPA1P09651 372 aaKnown RBP eCLIP7.51□□□□□ -1.21
LIMA1-202ENST00000394943 TKTP29401 623 aaKnown RBP7.51□□□□□ -1.21
LIMA1-202ENST00000394943 SCNN1AP37088 669 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 RAD23BP54727 409 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 STILQ15468 1287 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 ISM2Q6H9L7 571 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 SPRED2Q7Z698 418 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 VN1R2Q8NFZ6 395 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 KCTD13Q8WZ19 329 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 NUP58Q9BVL2 599 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 RBSNQ9H1K0 784 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 LHX5Q9H2C1 402 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 TMEM51Q9NW97 253 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 GFPT2O94808 682 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 CTNNB1P35222 781 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 STX17P56962 302 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 TRIM14Q14142 442 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 MAPRE1Q15691 268 aaKnown RBP7.51□□□□□ -1.21
LIMA1-202ENST00000394943 SLC4A11Q8NBS3 891 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 OR10T2Q8NGX3 314 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 NAP1L5Q96NT1 182 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-202ENST00000394943 FAM193BQ96PV7 902 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-202ENST00000394943 PLEKHA4Q9H4M7 779 aa7.51□□□□□ -1.21
LIMA1-202ENST00000394943 CASTOR2A6NHX0 329 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 CYB561D2O14569 222 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 GABRB2P47870 512 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 GCLMP48507 274 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 FANCCQ00597 558 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 HYAL1Q12794 435 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 GLRA4Q5JXX5 417 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 ZNF697Q5TEC3 545 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 BNIPLQ7Z465 357 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 VSTM4Q8IW00 320 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 ARHGEF19Q8IW93 802 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 MYCBPAPQ8TBZ2 947 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 PABPC5Q96DU9 382 aaKnown RBP7.5□□□□□ -1.21
LIMA1-202ENST00000394943 DNAJC7Q99615 494 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 AJAP1Q9UKB5 411 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-202ENST00000394943 CAPN11Q9UMQ6 739 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 BECN2A8MW95 431 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 TNFRSF10BO14763 440 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 GLP2RO95838 553 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 ZDHHC11BP0C7U3 371 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 ATP1A3P13637 1013 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 ATF2P15336 505 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 GUCY2FP51841 1108 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 OSTNP61366 133 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms