RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 GUCY2FP51841 1108 aa26.75■■□□□ 1.87
SHOX2-201ENST00000389589 TAP1Q03518 808 aa26.75■■□□□ 1.87
SHOX2-201ENST00000389589 ERICH1Q86X53 443 aa26.75■■□□□ 1.87
SHOX2-201ENST00000389589 SLC4A11Q8NBS3 891 aa26.75■■□□□ 1.87
SHOX2-201ENST00000389589 WHAMMQ8TF30 809 aa26.75■■□□□ 1.87
SHOX2-201ENST00000389589 TMEM176AQ96HP8 235 aa26.75■■□□□ 1.87
SHOX2-201ENST00000389589 TSPAN18Q96SJ8 248 aa26.75■■□□□ 1.87
SHOX2-201ENST00000389589 UPF3AQ9H1J1 476 aaKnown RBP26.75■■□□□ 1.87
SHOX2-201ENST00000389589 AMACRQ9UHK6 382 aa26.75■■□□□ 1.87
SHOX2-201ENST00000389589 STRIP2Q9ULQ0 834 aa26.75■■□□□ 1.87
SHOX2-201ENST00000389589 CARSP49589 748 aaKnown RBP26.74■■□□□ 1.87
SHOX2-201ENST00000389589 PTPN11Q06124 597 aaPredicted RBP26.74■■□□□ 1.87
SHOX2-201ENST00000389589 INCA1Q0VD86 236 aa26.74■■□□□ 1.87
SHOX2-201ENST00000389589 GNASQ5JWF2 1037 aa26.74■■□□□ 1.87
SHOX2-201ENST00000389589 SND1Q7KZF4 910 aaKnown RBP eCLIP26.74■■□□□ 1.87
SHOX2-201ENST00000389589 WDTC1Q8N5D0 677 aa26.74■■□□□ 1.87
SHOX2-201ENST00000389589 BEST2Q8NFU1 509 aa26.74■■□□□ 1.87
SHOX2-201ENST00000389589 IFT81Q8WYA0 676 aa26.74■■□□□ 1.87
SHOX2-201ENST00000389589 TRIB2Q92519 343 aa26.74■■□□□ 1.87
SHOX2-201ENST00000389589 IP6K2Q9UHH9 426 aa26.74■■□□□ 1.87
SHOX2-201ENST00000389589 MTUS1Q9ULD2 1270 aa26.74■■□□□ 1.87
SHOX2-201ENST00000389589 HPCAL4Q9UM19 191 aa26.74■■□□□ 1.87
SHOX2-201ENST00000389589 PIN4Q9Y237 131 aaKnown RBP26.74■■□□□ 1.87
SHOX2-201ENST00000389589 ZSCAN5CA6NGD5 496 aaPredicted RBP26.74■■□□□ 1.87
SHOX2-201ENST00000389589 ZBTB6Q15916 424 aa26.74■■□□□ 1.87
SHOX2-201ENST00000389589 AADACL2Q6P093 401 aa26.74■■□□□ 1.87
SHOX2-201ENST00000389589 ALKAL1Q6UXT8 129 aa26.74■■□□□ 1.87
SHOX2-201ENST00000389589 SLC13A5Q86YT5 568 aaPredicted RBP26.74■■□□□ 1.87
SHOX2-201ENST00000389589 TMEM40Q8WWA1 233 aa26.74■■□□□ 1.87
SHOX2-201ENST00000389589 ARHGAP39Q9C0H5 1083 aa26.74■■□□□ 1.87
SHOX2-201ENST00000389589 CNTN3Q9P232 1028 aa26.74■■□□□ 1.87
SHOX2-201ENST00000389589 BARX2Q9UMQ3 279 aaPredicted RBP26.74■■□□□ 1.87
SHOX2-201ENST00000389589 NR2E1Q9Y466 385 aa26.74■■□□□ 1.87
SHOX2-201ENST00000389589 SCN1AP35498 2009 aa26.73■■□□□ 1.87
SHOX2-201ENST00000389589 PSTPIP1O43586 416 aa26.73■■□□□ 1.87
SHOX2-201ENST00000389589 FLT3LGP49771 235 aa26.73■■□□□ 1.87
SHOX2-201ENST00000389589 DNAJC24Q6P3W2 148 aa26.73■■□□□ 1.87
SHOX2-201ENST00000389589 PAXIP1Q6ZW49 1069 aaPredicted RBP26.73■■□□□ 1.87
SHOX2-201ENST00000389589 TMEM130Q8N3G9 435 aa26.73■■□□□ 1.87
SHOX2-201ENST00000389589 ELOVL4Q9GZR5 314 aa26.73■■□□□ 1.87
SHOX2-201ENST00000389589 KIAA1257Q9ULG3 409 aa26.73■■□□□ 1.87
SHOX2-201ENST00000389589 NFU1Q9UMS0 254 aa26.73■■□□□ 1.87
SHOX2-201ENST00000389589 GABRQQ9UN88 632 aa26.73■■□□□ 1.87
SHOX2-201ENST00000389589 ESYT3A0FGR9 886 aa26.72■■□□□ 1.87
SHOX2-201ENST00000389589 MYADML2A6NDP7 307 aa26.72■■□□□ 1.87
SHOX2-201ENST00000389589 PHF2O75151 1096 aa26.72■■□□□ 1.87
SHOX2-201ENST00000389589 CHRNA3P32297 505 aa26.72■■□□□ 1.87
SHOX2-201ENST00000389589 DHX34Q14147 1143 aaKnown RBP26.72■■□□□ 1.87
SHOX2-201ENST00000389589 DENND1BQ6P3S1 775 aa26.72■■□□□ 1.87
SHOX2-201ENST00000389589 PLEKHA4Q9H4M7 779 aa26.72■■□□□ 1.87
SHOX2-201ENST00000389589 TCRBV5S1A1TA0A578 114 aa26.72■■□□□ 1.87
SHOX2-201ENST00000389589 TMEM191CA6NGB0 347 aa26.72■■□□□ 1.87
SHOX2-201ENST00000389589 VDRP11473 427 aa26.72■■□□□ 1.87
SHOX2-201ENST00000389589 NKX3-2P78367 333 aa26.72■■□□□ 1.87
SHOX2-201ENST00000389589 ADAT2Q7Z6V5 191 aaKnown RBP26.72■■□□□ 1.87
SHOX2-201ENST00000389589 RHOT1Q8IXI2 618 aa26.72■■□□□ 1.87
SHOX2-201ENST00000389589 GDAP1L1Q96MZ0 367 aa26.72■■□□□ 1.87
SHOX2-201ENST00000389589 ZMAT2Q96NC0 199 aaKnown RBP26.72■■□□□ 1.87
SHOX2-201ENST00000389589 RUNDC3BQ96NL0 473 aa26.72■■□□□ 1.87
SHOX2-201ENST00000389589 UTP11Q9Y3A2 253 aaKnown RBP26.72■■□□□ 1.87
SHOX2-201ENST00000389589 FAM187AA6NFU0 413 aa26.71■■□□□ 1.87
SHOX2-201ENST00000389589 RECQL4O94761 1208 aa26.71■■□□□ 1.87
SHOX2-201ENST00000389589 OAS2P29728 719 aaKnown RBP26.71■■□□□ 1.87
SHOX2-201ENST00000389589 LRRC52Q8N7C0 313 aa26.71■■□□□ 1.87
SHOX2-201ENST00000389589 C3orf20Q8ND61 904 aa26.71■■□□□ 1.87
SHOX2-201ENST00000389589 TWNKQ96RR1 684 aa26.71■■□□□ 1.87
SHOX2-201ENST00000389589 CELF4Q9BZC1 486 aaKnown RBP26.71■■□□□ 1.87
SHOX2-201ENST00000389589 RAB17Q9H0T7 212 aa26.71■■□□□ 1.87
SHOX2-201ENST00000389589 NXF3Q9H4D5 531 aaKnown RBP26.71■■□□□ 1.87
SHOX2-201ENST00000389589 GPBP1L1Q9HC44 474 aaPredicted RBP26.71■■□□□ 1.87
SHOX2-201ENST00000389589 ERVK-5Q9HDB9 667 aa26.71■■□□□ 1.87
SHOX2-201ENST00000389589 SEPT4O43236 478 aa26.7■■□□□ 1.87
SHOX2-201ENST00000389589 AARSP49588 968 aaKnown RBP eCLIP26.7■■□□□ 1.874e-6■■■■□ 24
SHOX2-201ENST00000389589 MAIP1Q8WWC4 291 aa26.7■■□□□ 1.87
SHOX2-201ENST00000389589 SEC14L1Q92503 715 aa26.7■■□□□ 1.87
SHOX2-201ENST00000389589 MED4Q9NPJ6 270 aa26.7■■□□□ 1.87
SHOX2-201ENST00000389589 UBQLN1Q9UMX0 589 aaKnown RBP26.7■■□□□ 1.87
SHOX2-201ENST00000389589 HES2Q9Y543 173 aa26.7■■□□□ 1.87
SHOX2-201ENST00000389589 TTI1O43156 1089 aa26.7■■□□□ 1.86
SHOX2-201ENST00000389589 RARBP10826 455 aa26.7■■□□□ 1.86
SHOX2-201ENST00000389589 DR1Q01658 176 aa26.7■■□□□ 1.86
SHOX2-201ENST00000389589 CNGA2Q16280 664 aa26.7■■□□□ 1.86
SHOX2-201ENST00000389589 CYP1B1Q16678 543 aa26.7■■□□□ 1.86
SHOX2-201ENST00000389589 CYP4F22Q6NT55 531 aa26.7■■□□□ 1.86
SHOX2-201ENST00000389589 PRELID2Q8N945 189 aa26.7■■□□□ 1.86
SHOX2-201ENST00000389589 DDX27Q96GQ7 796 aaKnown RBP26.7■■□□□ 1.86
SHOX2-201ENST00000389589 HMGXB4Q9UGU5 601 aa26.7■■□□□ 1.86
SHOX2-201ENST00000389589 GTF2IRD1Q9UHL9 959 aa26.7■■□□□ 1.86
SHOX2-201ENST00000389589 M0QZ92 97 aa26.69■■□□□ 1.86
SHOX2-201ENST00000389589 XPOTO43592 962 aaKnown RBP26.69■■□□□ 1.86
SHOX2-201ENST00000389589 HMGCRP04035 888 aa26.69■■□□□ 1.86
SHOX2-201ENST00000389589 ATF7P17544 494 aaPredicted RBP26.69■■□□□ 1.86
SHOX2-201ENST00000389589 NOGQ13253 232 aa26.69■■□□□ 1.86
SHOX2-201ENST00000389589 HSP90B2PQ58FF3 399 aa26.69■■□□□ 1.86
SHOX2-201ENST00000389589 DCUN1D2Q6PH85 259 aa26.69■■□□□ 1.86
SHOX2-201ENST00000389589 FAM114A2Q9NRY5 505 aa26.69■■□□□ 1.86
SHOX2-201ENST00000389589 WDR35Q9P2L0 1181 aa26.69■■□□□ 1.86
SHOX2-201ENST00000389589 WDR3Q9UNX4 943 aaKnown RBP eCLIP26.69■■□□□ 1.86
SHOX2-201ENST00000389589 FSCN2O14926 492 aa26.69■■□□□ 1.86
SHOX2-201ENST00000389589 SGO2Q562F6 1265 aa26.69■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms