RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 CCDC172P0C7W6 258 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 PAFAH1B1P43034 410 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 CCT5P48643 541 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 EPHB4P54760 987 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 DSC3Q14574 896 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 WDR72Q3MJ13 1102 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 SCARA5Q6ZMJ2 495 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 ENOSF1Q7L5Y1 443 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 ANKRD33Q7Z3H0 272 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 FMNL3Q8IVF7 1028 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 FAM71AQ8IYT1 594 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 BEST2Q8NFU1 509 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 CXorf38Q8TB03 319 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 FAM81BQ96LP2 452 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 RUFY1Q96T51 708 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 ACP6Q9NPH0 428 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 ITGA11Q9UKX5 1188 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 ATP11BQ9Y2G3 1177 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 DERAQ9Y315 318 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 PITPNM1O00562 1244 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 COL6A1P12109 1028 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 TBXAS1P24557 533 aaPredicted RBP13.25□□□□□ -0.29
CIITA-202ENST00000381835 FAAP100Q0VG06 881 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 ZBTB6Q15916 424 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 ASTE1Q2TB18 679 aaPredicted RBP13.25□□□□□ -0.29
CIITA-202ENST00000381835 TMEM106CQ9BVX2 250 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 PPP1R12CQ9BZL4 782 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 NIF3L1Q9GZT8 377 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 HIPK3Q9H422 1215 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 STIM2Q9P246 746 aa13.25□□□□□ -0.29
CIITA-202ENST00000381835 UBQLN1Q9UMX0 589 aaKnown RBP13.25□□□□□ -0.29
CIITA-202ENST00000381835 MYH10P35580 1976 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 A0A087WUV0 522 aaPredicted RBP13.24□□□□□ -0.29
CIITA-202ENST00000381835 A0A087X0T9 212 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 A0A0U1RQF3 1178 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 EBAG9O00559 213 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 NBNO60934 754 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 LCA5LO95447 670 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 FAM228BP0C875 321 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 MLH1P40692 756 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 MAGEA1P43355 309 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 RAB27AP51159 221 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 CCL23P55773 120 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 GNGT1P63211 74 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 RBP5P82980 135 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 XKR4Q5GH76 650 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 ZNF667Q5HYK9 610 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 AGMOQ6ZNB7 445 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 SLC47A2Q86VL8 602 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 BCAS4Q8TDM0 211 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 SCLYQ96I15 445 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 HPDLQ96IR7 371 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 GAD1Q99259 594 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 GOLGA2P5Q9HBQ8 144 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 SMARCAL1Q9NZC9 954 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 EHD2Q9NZN4 543 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 POLIQ9UNA4 740 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 PCDHB4Q9Y5E5 795 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 PTGESO14684 152 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 PPEF2O14830 753 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 NCK2O43639 380 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 HSF2BPO75031 334 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 KCNE1P15382 129 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 CD58P19256 250 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 AFF1P51825 1210 aaKnown RBP13.24□□□□□ -0.29
CIITA-202ENST00000381835 C8orf74Q6P047 294 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 EMBQ6PCB8 327 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 TADA2BQ86TJ2 420 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 MICALL1Q8N3F8 863 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 ANKLE1Q8NAG6 615 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 RPS6KC1Q96S38 1066 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 SH3GL2Q99962 352 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 TRAIPQ9BWF2 469 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 C11orf49Q9H6J7 331 aa13.24□□□□□ -0.29
CIITA-202ENST00000381835 SEPT11Q9NVA2 429 aaKnown RBP13.24□□□□□ -0.29
CIITA-202ENST00000381835 ZNF623O75123 536 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 CALCAP01258 141 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 WEE2P0C1S8 567 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 ATF7P17544 494 aaPredicted RBP13.23□□□□□ -0.29
CIITA-202ENST00000381835 ATICP31939 592 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 NAP1L1P55209 391 aaKnown RBP13.23□□□□□ -0.29
CIITA-202ENST00000381835 SLC18A3Q16572 532 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 ALS2CLQ60I27 953 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 TMEM270Q6UE05 265 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 MRPL10Q7Z7H8 261 aaKnown RBP13.23□□□□□ -0.29
CIITA-202ENST00000381835 RTN4RL1Q86UN2 441 aaPredicted RBP13.23□□□□□ -0.29
CIITA-202ENST00000381835 VPS36Q86VN1 386 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 DBF4BQ8NFT6 615 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 SLC20A1Q8WUM9 679 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 TAF4BQ92750 862 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 TOX2Q96NM4 488 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 TDRD15B5MCY1 1934 aaKnown RBP13.23□□□□□ -0.29
CIITA-202ENST00000381835 FAM170AA1A519 330 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 ARL5CA6NH57 179 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 EIF3HO15372 352 aaKnown RBP eCLIP13.23□□□□□ -0.29
CIITA-202ENST00000381835 XPOTO43592 962 aaKnown RBP13.23□□□□□ -0.29
CIITA-202ENST00000381835 ACO1P21399 889 aaKnown RBP13.23□□□□□ -0.29
CIITA-202ENST00000381835 CYP2C18P33260 490 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 ASPAP45381 313 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 SOX4Q06945 474 aaPredicted RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms