RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 ASTN2O75129 1339 aaPredicted RBP19.49■□□□□ 0.71
CCDC3-201ENST00000378825 NFIBO00712 420 aa19.48■□□□□ 0.71
CCDC3-201ENST00000378825 ZBED4O75132 1171 aa19.48■□□□□ 0.71
CCDC3-201ENST00000378825 MARK3P27448 753 aa19.48■□□□□ 0.71
CCDC3-201ENST00000378825 NPTX2P47972 431 aa19.48■□□□□ 0.71
CCDC3-201ENST00000378825 SARNPP82979 210 aaKnown RBP19.48■□□□□ 0.71
CCDC3-201ENST00000378825 NFX1Q12986 1120 aaKnown RBP19.48■□□□□ 0.71
CCDC3-201ENST00000378825 NR1H3Q13133 447 aa19.48■□□□□ 0.71
CCDC3-201ENST00000378825 NBPF20Q3BBV1 942 aa19.48■□□□□ 0.71
CCDC3-201ENST00000378825 LDHDQ86WU2 507 aa19.48■□□□□ 0.71
CCDC3-201ENST00000378825 ZNF276Q8N554 614 aa19.48■□□□□ 0.71
CCDC3-201ENST00000378825 KAT6AQ92794 2004 aa19.48■□□□□ 0.71
CCDC3-201ENST00000378825 CLUHO75153 1309 aa19.48■□□□□ 0.71
CCDC3-201ENST00000378825 ANKRD22Q5VYY1 191 aa19.48■□□□□ 0.71
CCDC3-201ENST00000378825 RGS9BPQ6ZS82 235 aa19.48■□□□□ 0.71
CCDC3-201ENST00000378825 ZNF333Q96JL9 665 aa19.48■□□□□ 0.71
CCDC3-201ENST00000378825 WDR83Q9BRX9 315 aaKnown RBP19.48■□□□□ 0.71
CCDC3-201ENST00000378825 AVENQ9NQS1 362 aaPredicted RBP19.48■□□□□ 0.71
CCDC3-201ENST00000378825 TMOD2Q9NZR1 351 aa19.48■□□□□ 0.71
CCDC3-201ENST00000378825 SPDYE2BA6NHP3 402 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 SIGLEC16A6NMB1 481 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 TLR3O15455 904 aaKnown RBP19.47■□□□□ 0.71
CCDC3-201ENST00000378825 NPM3O75607 178 aaKnown RBP19.47■□□□□ 0.71
CCDC3-201ENST00000378825 POTEJP0CG39 1038 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 SPDYE6P0CI01 402 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 SP100P23497 879 aaPredicted RBP19.47■□□□□ 0.71
CCDC3-201ENST00000378825 SLC1A1P43005 524 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 QARSP47897 775 aaKnown RBP19.47■□□□□ 0.71
CCDC3-201ENST00000378825 NRLP54845 237 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 CYP24A1Q07973 514 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 XKR9Q5GH70 373 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 LMNTD2Q8IXW0 634 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 RIBC1Q8N443 379 aaPredicted RBP19.47■□□□□ 0.71
CCDC3-201ENST00000378825 FLAD1Q8NFF5 587 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 TCP10LQ8TDR4 215 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 TEKT4Q8WW24 435 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 FAM136AQ96C01 138 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 PDGFDQ9GZP0 370 aaPredicted RBP19.47■□□□□ 0.71
CCDC3-201ENST00000378825 ZCWPW1Q9H0M4 648 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 HEY2Q9UBP5 337 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 TELO2Q9Y4R8 837 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 NVLO15381 856 aaKnown RBP19.47■□□□□ 0.71
CCDC3-201ENST00000378825 ATP9AO75110 1047 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 CPA2P48052 419 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 NCKAP1LP55160 1127 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 WASHC2DQ5SRD0 308 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 SYCP2LQ5T4T6 812 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 SNX30Q5VWJ9 437 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 TEX9Q8N6V9 391 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 TSC22D3Q99576 134 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 ZNF277Q9NRM2 450 aaPredicted RBP19.47■□□□□ 0.71
CCDC3-201ENST00000378825 ZNF70Q9UC06 446 aaPredicted RBP19.47■□□□□ 0.71
CCDC3-201ENST00000378825 TMX2Q9Y320 296 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 IVNS1ABPQ9Y6Y0 642 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 PTPRJQ12913 1337 aa19.47■□□□□ 0.71
CCDC3-201ENST00000378825 LRRD1A4D1F6 860 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 C2CD2LO14523 706 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 PMM2O15305 246 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 KLC1Q07866 573 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 FOXB2Q5VYV0 432 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 KATNAL2Q8IYT4 538 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 OGFOD1Q8N543 542 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 RIT2Q99578 217 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 HOMER2Q9NSB8 354 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 ARMCX1Q9P291 453 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 F8VP50 259 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 TRAFD1O14545 582 aaPredicted RBP19.46■□□□□ 0.71
CCDC3-201ENST00000378825 KIF3CO14782 793 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 TBX10O75333 385 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 SERPINB3P29508 390 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 MRPS9P82933 396 aaKnown RBP19.46■□□□□ 0.71
CCDC3-201ENST00000378825 PLCB3Q01970 1234 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 DGKZQ13574 1117 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 RCN2Q14257 317 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 CCDC6Q16204 474 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 SLC45A4Q5BKX6 768 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 FNBP1LQ5T0N5 605 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 RINLQ6ZS11 566 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 RBBP8NLQ8NC74 664 aaPredicted RBP19.46■□□□□ 0.71
CCDC3-201ENST00000378825 BBOF1Q8ND07 529 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 SMG5Q9UPR3 1016 aaKnown RBP19.46■□□□□ 0.71
CCDC3-201ENST00000378825 C2CD2Q9Y426 696 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 WASF2Q9Y6W5 498 aa19.46■□□□□ 0.71
CCDC3-201ENST00000378825 MYH9P35579 1960 aaKnown RBP19.46■□□□□ 0.71
CCDC3-201ENST00000378825 CYP1A1P04798 512 aaPredicted RBP19.45■□□□□ 0.7
CCDC3-201ENST00000378825 GLRA2P23416 452 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 GDF10P55107 478 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 DYNLT1P63172 113 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 ZNF252P-AS1Q0IIN9 211 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 DLGAP5Q15398 846 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 TDRPQ86YL5 185 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 KBTBD2Q8IY47 623 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 SCG3Q8WXD2 468 aaKnown RBP19.45■□□□□ 0.7
CCDC3-201ENST00000378825 DCLRE1BQ9H816 532 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 SMAPO00193 183 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 CAPN9O14815 690 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 PSTPIP1O43586 416 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 LGR5O75473 907 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 MAPTP10636 758 aaKnown RBP19.45■□□□□ 0.7
CCDC3-201ENST00000378825 ACADSP16219 412 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms