RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 PDE11AQ9HCR9 933 aa23.41■■□□□ 1.34
CCDC28B-201ENST00000373602 AGAP1Q9UPQ3 857 aa23.41■■□□□ 1.34
CCDC28B-201ENST00000373602 TULP1O00294 542 aaPredicted RBP23.4■■□□□ 1.34
CCDC28B-201ENST00000373602 ITGB3P05106 788 aa23.4■■□□□ 1.34
CCDC28B-201ENST00000373602 FCARP24071 287 aa23.4■■□□□ 1.34
CCDC28B-201ENST00000373602 PFKPQ01813 784 aa23.4■■□□□ 1.34
CCDC28B-201ENST00000373602 SLC39A12Q504Y0 691 aa23.4■■□□□ 1.34
CCDC28B-201ENST00000373602 FAM78AQ5JUQ0 283 aa23.4■■□□□ 1.34
CCDC28B-201ENST00000373602 TMC8Q8IU68 726 aa23.4■■□□□ 1.34
CCDC28B-201ENST00000373602 DTWD2Q8NBA8 298 aa23.4■■□□□ 1.34
CCDC28B-201ENST00000373602 NOC3LQ8WTT2 800 aaKnown RBP23.4■■□□□ 1.34
CCDC28B-201ENST00000373602 SHDQ96IW2 340 aa23.4■■□□□ 1.34
CCDC28B-201ENST00000373602 ASB16Q96NS5 453 aa23.4■■□□□ 1.34
CCDC28B-201ENST00000373602 ITGA11Q9UKX5 1188 aa23.4■■□□□ 1.34
CCDC28B-201ENST00000373602 ASB3Q9Y575 518 aa23.4■■□□□ 1.34
CCDC28B-201ENST00000373602 CASP1P29466 404 aa23.39■■□□□ 1.33
CCDC28B-201ENST00000373602 SNW1Q13573 536 aaKnown RBP23.39■■□□□ 1.33
CCDC28B-201ENST00000373602 SLC44A4Q53GD3 710 aa23.39■■□□□ 1.33
CCDC28B-201ENST00000373602 TTC9BQ8N6N2 239 aa23.39■■□□□ 1.33
CCDC28B-201ENST00000373602 LRRC52Q8N7C0 313 aa23.39■■□□□ 1.33
CCDC28B-201ENST00000373602 SHKBP1Q8TBC3 707 aa23.39■■□□□ 1.33
CCDC28B-201ENST00000373602 FAM84AQ96KN4 292 aa23.39■■□□□ 1.33
CCDC28B-201ENST00000373602 ZSWIM3Q96MP5 696 aa23.39■■□□□ 1.33
CCDC28B-201ENST00000373602 BLZF1Q9H2G9 400 aa23.39■■□□□ 1.33
CCDC28B-201ENST00000373602 ZFP14Q9HCL3 533 aa23.39■■□□□ 1.33
CCDC28B-201ENST00000373602 HSPBP1Q9NZL4 362 aa23.39■■□□□ 1.33
CCDC28B-201ENST00000373602 TCHHQ07283 1943 aa23.39■■□□□ 1.33
CCDC28B-201ENST00000373602 UBE4BO95155 1302 aa23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 PVALEFA0A1B0GWK0 134 aa23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 ZNF233A6NK53 670 aa23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 TGFB1I1O43294 461 aa23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 GJA1P17302 382 aa23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 TUFMP49411 452 aaKnown RBP23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 PRKCQQ04759 706 aa23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 SMARCB1Q12824 385 aa23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 SURF1Q15526 300 aa23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 TEAD2Q15562 447 aa23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 MLF2Q15773 248 aaPredicted RBP23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 SCARA3Q6AZY7 606 aa23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 LRRTM3Q86VH5 581 aa23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 CBWD2Q8IUF1 395 aa23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 CSGALNACT2Q8N6G5 542 aa23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 C2orf15Q8WU43 125 aaKnown RBP23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 SMARCD2Q92925 531 aa23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 DDX23Q9BUQ8 820 aaKnown RBP23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 GPR88Q9GZN0 384 aa23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 KIAA1586Q9HCI6 787 aa23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 INTS13Q9NVM9 706 aa23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 SIX4Q9UIU6 781 aa23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 SIT1Q9Y3P8 196 aa23.38■■□□□ 1.33
CCDC28B-201ENST00000373602 SOAT2O75908 522 aa23.37■■□□□ 1.33
CCDC28B-201ENST00000373602 TMEM191BP0C7N4 346 aa23.37■■□□□ 1.33
CCDC28B-201ENST00000373602 AFMP43652 599 aa23.37■■□□□ 1.33
CCDC28B-201ENST00000373602 RBP5P82980 135 aa23.37■■□□□ 1.33
CCDC28B-201ENST00000373602 DNAJB7Q7Z6W7 309 aaPredicted RBP23.37■■□□□ 1.33
CCDC28B-201ENST00000373602 SCFD1Q8WVM8 642 aa23.37■■□□□ 1.33
CCDC28B-201ENST00000373602 PSMG2Q969U7 264 aa23.37■■□□□ 1.33
CCDC28B-201ENST00000373602 FOXQ1Q9C009 403 aa23.37■■□□□ 1.33
CCDC28B-201ENST00000373602 MTMR12Q9C0I1 747 aa23.37■■□□□ 1.33
CCDC28B-201ENST00000373602 TRPV4Q9HBA0 871 aa23.37■■□□□ 1.33
CCDC28B-201ENST00000373602 ZDHHC9Q9Y397 364 aa23.37■■□□□ 1.33
CCDC28B-201ENST00000373602 KRT19P08727 400 aa23.36■■□□□ 1.33
CCDC28B-201ENST00000373602 SNRPFP62306 86 aaKnown RBP23.36■■□□□ 1.33
CCDC28B-201ENST00000373602 BFSP1Q12934 665 aa23.36■■□□□ 1.33
CCDC28B-201ENST00000373602 CUL4BQ13620 913 aa23.36■■□□□ 1.33
CCDC28B-201ENST00000373602 LMBRD2Q68DH5 695 aaPredicted RBP23.36■■□□□ 1.33
CCDC28B-201ENST00000373602 ITIH5Q86UX2 942 aa23.36■■□□□ 1.33
CCDC28B-201ENST00000373602 DCP1BQ8IZD4 617 aaKnown RBP23.36■■□□□ 1.33
CCDC28B-201ENST00000373602 PDCL2Q8N4E4 241 aa23.36■■□□□ 1.33
CCDC28B-201ENST00000373602 PJA1Q8NG27 643 aa23.36■■□□□ 1.33
CCDC28B-201ENST00000373602 SPPL2BQ8TCT7 592 aa23.36■■□□□ 1.33
CCDC28B-201ENST00000373602 ANKRD36BP1Q96IX9 119 aa23.36■■□□□ 1.33
CCDC28B-201ENST00000373602 SEPT5Q99719 369 aaPredicted RBP23.36■■□□□ 1.33
CCDC28B-201ENST00000373602 AGPAT3Q9NRZ7 376 aa23.36■■□□□ 1.33
CCDC28B-201ENST00000373602 GDAP2Q9NXN4 497 aa23.36■■□□□ 1.33
CCDC28B-201ENST00000373602 DLGAP2Q9P1A6 1054 aa23.36■■□□□ 1.33
CCDC28B-201ENST00000373602 SERTAD1Q9UHV2 236 aa23.36■■□□□ 1.33
CCDC28B-201ENST00000373602 L1RE1Q9UN81 338 aa23.36■■□□□ 1.33
CCDC28B-201ENST00000373602 PTPRJQ12913 1337 aa23.35■■□□□ 1.33
CCDC28B-201ENST00000373602 A0A1W2PRU2 124 aa23.35■■□□□ 1.33
CCDC28B-201ENST00000373602 KANSL1LA0AUZ9 987 aa23.35■■□□□ 1.33
CCDC28B-201ENST00000373602 HUS1O60921 280 aa23.35■■□□□ 1.33
CCDC28B-201ENST00000373602 DCNP07585 359 aaKnown RBP23.35■■□□□ 1.33
CCDC28B-201ENST00000373602 SLFN14P0C7P3 912 aa23.35■■□□□ 1.33
CCDC28B-201ENST00000373602 BMT2Q1RMZ1 405 aa23.35■■□□□ 1.33
CCDC28B-201ENST00000373602 MGAT5BQ3V5L5 792 aa23.35■■□□□ 1.33
CCDC28B-201ENST00000373602 NELFCDQ8IXH7 590 aa23.35■■□□□ 1.33
CCDC28B-201ENST00000373602 CEP57L1Q8IYX8 460 aa23.35■■□□□ 1.33
CCDC28B-201ENST00000373602 TMEM86AQ8N2M4 240 aa23.35■■□□□ 1.33
CCDC28B-201ENST00000373602 OR5B17Q8NGF7 314 aa23.35■■□□□ 1.33
CCDC28B-201ENST00000373602 ZSCAN18Q8TBC5 510 aaPredicted RBP23.35■■□□□ 1.33
CCDC28B-201ENST00000373602 ZNF334Q9HCZ1 680 aaPredicted RBP23.35■■□□□ 1.33
CCDC28B-201ENST00000373602 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 PROB1E7EW31 1015 aa23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 ACTN4O43707 911 aaKnown RBP23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 FGF19O95750 216 aa23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 HAPLN1P10915 354 aaPredicted RBP23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 ATF6P18850 670 aa23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 NBL1P41271 181 aa23.34■■□□□ 1.33
CCDC28B-201ENST00000373602 CDR1P51861 262 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms