RNA–Protein interactions for RNA: ENST00000371142.8

TM9SF3-201, Transcript of transmembrane 9 superfamily member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF3, Length 6,141 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-201ENST00000371142 DNAL1Q4LDG9 190 aa23.14■■□□□ 1.3
TM9SF3-201ENST00000371142 ERP27Q96DN0 273 aa23.14■■□□□ 1.3
TM9SF3-201ENST00000371142 ZMAT2Q96NC0 199 aaKnown RBP23.14■■□□□ 1.3
TM9SF3-201ENST00000371142 TFR2Q9UP52 801 aa23.14■■□□□ 1.3
TM9SF3-201ENST00000371142 CNTNAP5Q8WYK1 1306 aa23.14■■□□□ 1.29
TM9SF3-201ENST00000371142 EIF3DO15371 548 aaKnown RBP eCLIP23.14■■□□□ 1.29
TM9SF3-201ENST00000371142 NCAM1P13591 858 aa23.14■■□□□ 1.29
TM9SF3-201ENST00000371142 ZRANB3Q5FWF4 1079 aa23.14■■□□□ 1.29
TM9SF3-201ENST00000371142 STKLD1Q8NE28 680 aa23.14■■□□□ 1.29
TM9SF3-201ENST00000371142 XPO6Q96QU8 1125 aaKnown RBP23.14■■□□□ 1.29
TM9SF3-201ENST00000371142 KIF2CQ99661 725 aa23.14■■□□□ 1.29
TM9SF3-201ENST00000371142 GGA3Q9NZ52 723 aa23.14■■□□□ 1.29
TM9SF3-201ENST00000371142 H0Y626 953 aa23.14■■□□□ 1.29
TM9SF3-201ENST00000371142 TRIM16O95361 564 aa23.14■■□□□ 1.29
TM9SF3-201ENST00000371142 CAPRIN2Q6IMN6 1127 aaKnown RBP23.14■■□□□ 1.29
TM9SF3-201ENST00000371142 GALNT4Q8N4A0 578 aa23.14■■□□□ 1.29
TM9SF3-201ENST00000371142 SLC38A7Q9NVC3 462 aa23.14■■□□□ 1.29
TM9SF3-201ENST00000371142 RASSF10A6NK89 507 aa23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 ACADSBP45954 432 aa23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 EME1Q96AY2 570 aa23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 TMEM39BQ9GZU3 492 aa23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 RSAD1Q9HA92 442 aa23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 EIF3HO15372 352 aaKnown RBP eCLIP23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 CYP2C9P11712 490 aa23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 PARK7Q99497 189 aaKnown RBP23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 ADCK1Q86TW2 530 aa23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 SCFD2Q8WU76 684 aa23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 ALG6Q9Y672 507 aa23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 V9GYQ6 96 aa23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 MED14O60244 1454 aa23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 TMEM120BA0PK00 339 aa23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 GYPCP04921 128 aa23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 TMEM253P0C7T8 217 aa23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 TRAPPC11Q7Z392 1133 aa23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 CDR2LQ86X02 465 aaPredicted RBP23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 ARHGAP18Q8N392 663 aa23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 SEC16BQ96JE7 1060 aa23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 DDX28Q9NUL7 540 aaKnown RBP23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 NAGPAQ9UK23 515 aa23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 USP42Q9H9J4 1324 aaKnown RBP23.13■■□□□ 1.29
TM9SF3-201ENST00000371142 TBC1D4O60343 1298 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 INPP5DQ92835 1189 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 CLTCL1P53675 1640 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 ARL4DP49703 201 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 NPEPPSP55786 919 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 ZNF34Q8IZ26 560 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 LINC00116Q8NCU8 138 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 HPDLQ96IR7 371 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 ZNF556Q9HAH1 456 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 IGSF9BQ9UPX0 1349 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 SF3B3Q15393 1217 aaKnown RBP23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 AMHR2Q16671 573 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 KLHDC7AQ5VTJ3 777 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 FBXW10Q5XX13 1052 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 LAYNQ6UX15 382 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 FEZF2Q8TBJ5 459 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 BTN2A2Q8WVV5 523 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 KCNH7Q9NS40 1196 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 ALKQ9UM73 1620 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 CAMTA2O94983 1202 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 ITGB3P05106 788 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 SNRPAP09012 282 aaKnown RBP23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 CSE1LP55060 971 aaKnown RBP23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 GPR63Q9BZJ6 419 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 NIF3L1Q9GZT8 377 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 MROH9Q5TGP6 573 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 HHIPL2Q6UWX4 724 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 DCP1BQ8IZD4 617 aaKnown RBP23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 CAMSAP3Q9P1Y5 1249 aaPredicted RBP23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 DOLKQ9UPQ8 538 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 LZTS1Q9Y250 596 aa23.12■■□□□ 1.29
TM9SF3-201ENST00000371142 CARSP49589 748 aaKnown RBP23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 LAMB3Q13751 1172 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 SGSM3Q96HU1 749 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 CHRM3P20309 590 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 SOAT1P35610 550 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 C10orf120Q5SQS8 335 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 VIPAS39Q9H9C1 493 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 SLC26A4O43511 780 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 APOA1P02647 267 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 CHI3L2Q15782 390 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 AGBL2Q5U5Z8 902 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 PRPF39Q86UA1 669 aaKnown RBP23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 KIF2BQ8N4N8 673 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 ZIM3Q96PE6 472 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 ADCY3O60266 1144 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 SEZ6Q53EL9 994 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 CLEC17AQ6ZS10 378 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 TMCO5AQ8N6Q1 288 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 STAMBPL1Q96FJ0 436 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 TARS2Q9BW92 718 aaKnown RBP23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 SLC39A10Q9ULF5 831 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 GLB1LQ6UWU2 654 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 CHSY1Q86X52 802 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 TAAR1Q96RJ0 339 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 SRPK1Q96SB4 655 aaKnown RBP23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 ASCC2Q9H1I8 757 aaPredicted RBP23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 NSMCE4AQ9NXX6 385 aa23.11■■□□□ 1.29
TM9SF3-201ENST00000371142 ERAP1Q9NZ08 941 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms