RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 CCDC148Q8NFR7 591 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 BEST2Q8NFU1 509 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 HNRNPLLQ8WVV9 542 aaKnown RBP9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 BRF1Q92994 677 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 E2F7Q96AV8 911 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 C18orf25Q96B23 403 aaPredicted RBP9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 FAM20AQ96MK3 541 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 HSD17B14Q9BPX1 270 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 RNF26Q9BY78 433 aaPredicted RBP9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 POLD4Q9HCU8 107 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 ANO2Q9NQ90 1003 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 SH3GLB2Q9NR46 395 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 TMEM74BQ9NUR3 256 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 KIF26AQ9ULI4 1882 aaPredicted RBP9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 ABCA7Q8IZY2 2146 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 CCDC194A0A1B0GVG4 234 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 PODXLO00592 558 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 TRDMT1O14717 391 aaKnown RBP9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 N4BP3O15049 544 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 ACTN4O43707 911 aaKnown RBP9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 USO1O60763 962 aaKnown RBP9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 DKC1O60832 514 aaKnown RBP eCLIP9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 DGAT1O75907 488 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 C1QL1O75973 258 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 RHOBTB1O94844 696 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 LYPLA2O95372 231 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 ARSAP15289 507 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 IFNAR1P17181 557 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 LIG1P18858 919 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 MAPK8P45983 427 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 GALK1P51570 392 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 ITPRIPL2Q3MIP1 535 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 TSGA10IPQ3SY00 556 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 XKR4Q5GH76 650 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 RAB44Q7Z6P3 723 aaPredicted RBP9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 ELMOD1Q8N336 334 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 FRMD1Q8N878 549 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 RPLP0P6Q8NHW5 317 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 FAM200AQ8TCP9 573 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 PRIMPOLQ96LW4 560 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 UROC1Q96N76 676 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 PGLYRP2Q96PD5 576 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 EIF2AK1Q9BQI3 630 aaKnown RBP9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 FAM83CQ9BQN1 747 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 KIFC3Q9BVG8 833 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 TPSD1Q9BZJ3 242 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 GKN1Q9NS71 199 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 GJB4Q9NTQ9 266 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 PRMT7Q9NVM4 692 aaPredicted RBP9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 EBF1Q9UH73 591 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 MBD1Q9UIS9 605 aaPredicted RBP9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 KCNJ14Q9UNX9 436 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 CCL26Q9Y258 94 aa9.32□□□□□ -0.92
HMGB1P39-201ENST00000366304 CCDC196A0A1B0GTZ2 297 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 SYN3O14994 580 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 TRAPPC3O43617 180 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 HNRNPLP14866 589 aaKnown RBP eCLIP9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 GBP1P32455 592 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 CCT2P78371 535 aaKnown RBP9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 CYP4F8P98187 520 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 GRSF1Q12849 480 aaKnown RBP eCLIP9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 DUSP4Q13115 394 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 SEMA3BQ13214 749 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 PRPF4BQ13523 1007 aaKnown RBP9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 DMC1Q14565 340 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 GPR158Q5T848 1215 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 CYP2U1Q7Z449 544 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 KRI1Q8N9T8 703 aaKnown RBP9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 LEMD2Q8NC56 503 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 OR2I1PQ8NGU4 316 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 MDM1Q8TC05 714 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 BPIFB1Q8TDL5 484 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 PIGKQ92643 395 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 LRIG1Q96JA1 1093 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 SUSD3Q96L08 255 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 GPR88Q9GZN0 384 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 EBF3Q9H4W6 596 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 ANKEF1Q9NU02 776 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 OBP2AQ9NY56 170 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 SLC27A5Q9Y2P5 690 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 RAXQ9Y2V3 346 aa9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 TIMM13Q9Y5L4 95 aaPredicted RBP9.31□□□□□ -0.92
HMGB1P39-201ENST00000366304 ATG2BQ96BY7 2078 aa9.3□□□□□ -0.92
HMGB1P39-201ENST00000366304 UNC79Q9P2D8 2635 aa9.3□□□□□ -0.92
HMGB1P39-201ENST00000366304 PCNX2A6NKB5 2137 aa9.3□□□□□ -0.92
HMGB1P39-201ENST00000366304 H7C4K7 107 aa9.3□□□□□ -0.92
HMGB1P39-201ENST00000366304 ACKR2O00590 384 aa9.3□□□□□ -0.92
HMGB1P39-201ENST00000366304 WNT7AO00755 349 aa9.3□□□□□ -0.92
HMGB1P39-201ENST00000366304 ATG13O75143 517 aa9.3□□□□□ -0.92
HMGB1P39-201ENST00000366304 APBB3O95704 486 aa9.3□□□□□ -0.92
HMGB1P39-201ENST00000366304 ENGP17813 658 aa9.3□□□□□ -0.92
HMGB1P39-201ENST00000366304 PDIA3P30101 505 aaKnown RBP9.3□□□□□ -0.92
HMGB1P39-201ENST00000366304 PTGER3P43115 390 aa9.3□□□□□ -0.92
HMGB1P39-201ENST00000366304 OSTNP61366 133 aa9.3□□□□□ -0.92
HMGB1P39-201ENST00000366304 AAMPQ13685 434 aa9.3□□□□□ -0.92
HMGB1P39-201ENST00000366304 TRIM61Q5EBN2 209 aa9.3□□□□□ -0.92
HMGB1P39-201ENST00000366304 PPP4R3AQ6IN85 833 aa9.3□□□□□ -0.92
HMGB1P39-201ENST00000366304 SYT13Q7L8C5 426 aa9.3□□□□□ -0.92
HMGB1P39-201ENST00000366304 DNAJB7Q7Z6W7 309 aaPredicted RBP9.3□□□□□ -0.92
HMGB1P39-201ENST00000366304 TMEM150AQ86TG1 271 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms