RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 TSPYL1Q9H0U9 437 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 ZNF148Q9UQR1 794 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 TNNC2P02585 160 aa10.96□□□□□ -0.66
LIMA1-201ENST00000341247 HOXC6P09630 235 aa10.96□□□□□ -0.66
LIMA1-201ENST00000341247 RARGP13631 454 aa10.96□□□□□ -0.66
LIMA1-201ENST00000341247 MCCD1P59942 119 aaPredicted RBP10.96□□□□□ -0.66
LIMA1-201ENST00000341247 PLEKHA7Q6IQ23 1121 aa10.96□□□□□ -0.66
LIMA1-201ENST00000341247 DENND1BQ6P3S1 775 aa10.96□□□□□ -0.66
LIMA1-201ENST00000341247 ANKRD13AQ8IZ07 590 aa10.96□□□□□ -0.66
LIMA1-201ENST00000341247 SNF8Q96H20 258 aa10.96□□□□□ -0.66
LIMA1-201ENST00000341247 FAM167AQ96KS9 214 aa10.96□□□□□ -0.66
LIMA1-201ENST00000341247 SYNCQ9H7C4 482 aa10.96□□□□□ -0.66
LIMA1-201ENST00000341247 HMGXB4Q9UGU5 601 aa10.96□□□□□ -0.66
LIMA1-201ENST00000341247 CPSF3Q9UKF6 684 aaKnown RBP10.96□□□□□ -0.66
LIMA1-201ENST00000341247 DNPEPQ9ULA0 475 aa10.96□□□□□ -0.66
LIMA1-201ENST00000341247 A0A087WZ62 844 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 FAM107AO95990 144 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 MMP8P22894 467 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 ABCD1P33897 745 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 ZNF252P-AS1Q0IIN9 211 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 TMEM62Q0P6H9 643 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 NFX1Q12986 1120 aaKnown RBP10.95□□□□□ -0.66
LIMA1-201ENST00000341247 MXD4Q14582 209 aaPredicted RBP10.95□□□□□ -0.66
LIMA1-201ENST00000341247 SLMAPQ14BN4 828 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 PHF13Q86YI8 300 aaPredicted RBP10.95□□□□□ -0.66
LIMA1-201ENST00000341247 OTUD6BQ8N6M0 293 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 ANKRD42Q8N9B4 389 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 ATL2Q8NHH9 583 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 FDXACB1Q9BRP7 624 aaPredicted RBP10.95□□□□□ -0.66
LIMA1-201ENST00000341247 PCSK1NQ9UHG2 260 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 SCINQ9Y6U3 715 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 EVPLQ92817 2033 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 GOLGA8MH3BSY2 632 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 GPR25O00155 361 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 NUDT17P0C025 328 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 INSRRP14616 1297 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 SGSM1Q2NKQ1 1148 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 MPZL3Q6UWV2 235 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 TRIM72Q6ZMU5 477 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 WDTC1Q8N5D0 677 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 TMEM35BQ8NCS4 154 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 TCP11Q8WWU5 503 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 TLCD1Q96CP7 247 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 ANKRD36BP1Q96IX9 119 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 CDT1Q9H211 546 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 SMYD3Q9H7B4 428 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 RPF1Q9H9Y2 349 aaKnown RBP10.95□□□□□ -0.66
LIMA1-201ENST00000341247 KCNK9Q9NPC2 374 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 AGTPBP1Q9UPW5 1226 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 A6NNZ2 444 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 TRAPPC3O43617 180 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 ITGB3P05106 788 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 BYSLQ13895 437 aaKnown RBP10.95□□□□□ -0.66
LIMA1-201ENST00000341247 P3H1Q32P28 736 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 TUBB8Q3ZCM7 444 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 IZUMO3Q5VZ72 239 aa10.95□□□□□ -0.66
LIMA1-201ENST00000341247 C12orf50Q8NA57 414 aaPredicted RBP10.95□□□□□ -0.66
LIMA1-201ENST00000341247 PRMT1Q99873 361 aaKnown RBP10.95□□□□□ -0.66
LIMA1-201ENST00000341247 SIP14410 1827 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 IVDP26440 423 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 C1QBPQ07021 282 aaKnown RBP10.94□□□□□ -0.66
LIMA1-201ENST00000341247 AUHQ13825 339 aaKnown RBP10.94□□□□□ -0.66
LIMA1-201ENST00000341247 JOSD2Q8TAC2 188 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 IPO4Q8TEX9 1081 aaKnown RBP10.94□□□□□ -0.66
LIMA1-201ENST00000341247 TWNKQ96RR1 684 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 IP6K2Q9UHH9 426 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 LACTBL1A8MY62 500 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 ACKR2O00590 384 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 ABLIM1O14639 778 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 PIAS1O75925 651 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 RFC1P35251 1148 aaPredicted RBP10.94□□□□□ -0.66
LIMA1-201ENST00000341247 MAGEA9P43362 315 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 ASPAP45381 313 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 MCL1Q07820 350 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 PTPN20Q4JDL3 420 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 SYCP2LQ5T4T6 812 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 C9orf131Q5VYM1 1079 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 XPO6Q96QU8 1125 aaKnown RBP10.94□□□□□ -0.66
LIMA1-201ENST00000341247 INTS9Q9NV88 658 aaKnown RBP10.94□□□□□ -0.66
LIMA1-201ENST00000341247 DDX20Q9UHI6 824 aaKnown RBP10.94□□□□□ -0.66
LIMA1-201ENST00000341247 CYTH4Q9UIA0 394 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.94□□□□□ -0.66
LIMA1-201ENST00000341247 CAPN7Q9Y6W3 813 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 TMEM191CA6NGB0 347 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 PSTPIP1O43586 416 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 VIMP08670 466 aaKnown RBP10.94□□□□□ -0.66
LIMA1-201ENST00000341247 PSMA2P25787 234 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 KLF1Q13351 362 aaPredicted RBP10.94□□□□□ -0.66
LIMA1-201ENST00000341247 ZNF667Q5HYK9 610 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 JADE1Q6IE81 842 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 ARMCX2Q7L311 632 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 TADA2BQ86TJ2 420 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 UBA3Q8TBC4 463 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 AFG1LQ8WV93 481 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 DYDC1Q8WWB3 177 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 MPHOSPH6Q99547 160 aaKnown RBP10.94□□□□□ -0.66
LIMA1-201ENST00000341247 TMEM121Q9BTD3 319 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 XYLT2Q9H1B5 865 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 SMARCAD1Q9H4L7 1026 aa10.94□□□□□ -0.66
LIMA1-201ENST00000341247 CEP83Q9Y592 693 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms