RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 FHDC1Q9C0D6 1143 aaPredicted RBP14.46□□□□□ -0.1
CSPG4-201ENST00000308508 KLHL11Q9NVR0 708 aa14.46□□□□□ -0.1
CSPG4-201ENST00000308508 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.46□□□□□ -0.1
CSPG4-201ENST00000308508 ZNF862O60290 1169 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 NPM3O75607 178 aaKnown RBP14.45□□□□□ -0.1
CSPG4-201ENST00000308508 BBOX1O75936 387 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 IL6STP40189 918 aaPredicted RBP14.45□□□□□ -0.1
CSPG4-201ENST00000308508 CENPAP49450 140 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 CCZ1BP86790 482 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 CCZ1P86791 482 aaPredicted RBP14.45□□□□□ -0.1
CSPG4-201ENST00000308508 OR2W6PQ8NHA6 318 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 SCFD2Q8WU76 684 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 JADE3Q92613 823 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 CEP44Q9C0F1 390 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 BARHL2Q9NY43 387 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 PIPSLA2A3N6 862 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 LPCAT2Q7L5N7 544 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 FOXP4Q8IVH2 680 aaPredicted RBP14.45□□□□□ -0.1
CSPG4-201ENST00000308508 SPATA18Q8TC71 538 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 RIN2Q8WYP3 895 aaPredicted RBP14.45□□□□□ -0.1
CSPG4-201ENST00000308508 MED15Q96RN5 788 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 TIPINQ9BVW5 301 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 KCNF1Q9H3M0 494 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 GOLPH3Q9H4A6 298 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 SERHL2Q9H4I8 314 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 SERHLQ9NQF3 203 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 PZPP20742 1482 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 FKBP6O75344 327 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 CPA2P48052 419 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 STILQ15468 1287 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 CCDC126Q96EE4 140 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 LXNQ9BS40 222 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 FEM1BQ9UK73 627 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 ABCB11O95342 1321 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 LOC100653049A0A140TA62 436 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 KRT34O76011 436 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 CSPG5O95196 566 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 MOCS2O96007 188 aaPredicted RBP14.45□□□□□ -0.1
CSPG4-201ENST00000308508 SRGNP10124 158 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 CACHD1Q5VU97 1274 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 NAIF1Q69YI7 327 aaPredicted RBP14.45□□□□□ -0.1
CSPG4-201ENST00000308508 TTC30AQ86WT1 665 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 MAGED4Q96JG8 741 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 TRAPPC9Q96Q05 1148 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 ZFYVE1Q9HBF4 777 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 ANXA11P50995 505 aaKnown RBP14.45□□□□□ -0.1
CSPG4-201ENST00000308508 NPEPPSP55786 919 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 DNAJC3Q13217 504 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 TRAPPC11Q7Z392 1133 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 PPIL6Q8IXY8 311 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 ANKRD49Q8WVL7 239 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 CHP1Q99653 195 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 THUMPD3Q9BV44 507 aaKnown RBP14.45□□□□□ -0.1
CSPG4-201ENST00000308508 PHTF1Q9UMS5 762 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 KLHL20Q9Y2M5 609 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 PNMA8CA0A1B0GUJ8 204 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 PRIM2P49643 509 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 OTUD4Q01804 1114 aaKnown RBP14.45□□□□□ -0.1
CSPG4-201ENST00000308508 NFX1Q12986 1120 aaKnown RBP14.45□□□□□ -0.1
CSPG4-201ENST00000308508 SLC29A2Q14542 456 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 LAYNQ6UX15 382 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 NEK10Q6ZWH5 1172 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 KDELC2Q7Z4H8 507 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 MMGT1Q8N4V1 131 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 SEPT1Q8WYJ6 367 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 SRPK1Q96SB4 655 aaKnown RBP14.45□□□□□ -0.1
CSPG4-201ENST00000308508 ZNF341Q9BYN7 854 aa14.45□□□□□ -0.1
CSPG4-201ENST00000308508 LINC00854A0A1B0GVQ3 168 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 SERPINB8P50452 374 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 ITGA8P53708 1063 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 R3HDM1Q15032 1099 aaKnown RBP14.44□□□□□ -0.1
CSPG4-201ENST00000308508 SH3BP5LQ7L8J4 393 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 CENPLQ8N0S6 344 aaPredicted RBP14.44□□□□□ -0.1
CSPG4-201ENST00000308508 MCRS1Q96EZ8 462 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 MTA3Q9BTC8 594 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 HDHD2Q9H0R4 259 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 KLHL3Q9UH77 587 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 VPS9D1Q9Y2B5 631 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 ATP10BO94823 1461 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 DPYSL4O14531 572 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 MED26O95402 600 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 TAB1Q15750 504 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 SHROOM1Q2M3G4 852 aaPredicted RBP14.44□□□□□ -0.1
CSPG4-201ENST00000308508 LY9Q9HBG7 655 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 BTBD7Q9P203 1132 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.44□□□□□ -0.1
CSPG4-201ENST00000308508 AKT1P31749 480 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 GALCP54803 685 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 POU4F1Q01851 419 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 MIGA2Q7L4E1 593 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 USP38Q8NB14 1042 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 ADAM33Q9BZ11 813 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 TRPC7Q9HCX4 862 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 PIK3R1P27986 724 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 BNC2Q6ZN30 1099 aaPredicted RBP14.44□□□□□ -0.1
CSPG4-201ENST00000308508 ARID3BQ8IVW6 561 aaPredicted RBP14.44□□□□□ -0.1
CSPG4-201ENST00000308508 PLEKHF1Q96S99 279 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 VTA1Q9NP79 307 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 NMRK1Q9NWW6 199 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 HAO1Q9UJM8 370 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms