RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 SESN2P58004 480 aaPredicted RBP17.55■□□□□ 0.4
PHRF1-201ENST00000264555 PTGISQ16647 500 aa17.55■□□□□ 0.4
PHRF1-201ENST00000264555 EFHC1Q5JVL4 640 aa17.55■□□□□ 0.4
PHRF1-201ENST00000264555 USP15Q9Y4E8 981 aaPredicted RBP17.55■□□□□ 0.4
PHRF1-201ENST00000264555 WNT7AO00755 349 aa17.55■□□□□ 0.4
PHRF1-201ENST00000264555 CFLARO15519 480 aa17.55■□□□□ 0.4
PHRF1-201ENST00000264555 PROSCO94903 275 aa17.55■□□□□ 0.4
PHRF1-201ENST00000264555 ZWINTO95229 277 aa17.55■□□□□ 0.4
PHRF1-201ENST00000264555 LSM8O95777 96 aaKnown RBP17.55■□□□□ 0.4
PHRF1-201ENST00000264555 PGK2P07205 417 aa17.55■□□□□ 0.4
PHRF1-201ENST00000264555 GNL1P36915 607 aaPredicted RBP17.55■□□□□ 0.4
PHRF1-201ENST00000264555 C3orf62Q6ZUJ4 267 aa17.55■□□□□ 0.4
PHRF1-201ENST00000264555 TRIM33Q9UPN9 1127 aa17.55■□□□□ 0.4
PHRF1-201ENST00000264555 GLI1P08151 1106 aa17.55■□□□□ 0.4
PHRF1-201ENST00000264555 CLCN3P51790 818 aa17.55■□□□□ 0.4
PHRF1-201ENST00000264555 TTC8Q8TAM2 541 aa17.55■□□□□ 0.4
PHRF1-201ENST00000264555 PPWD1Q96BP3 646 aaKnown RBP17.55■□□□□ 0.4
PHRF1-201ENST00000264555 SDCCAG3Q96C92 435 aa17.55■□□□□ 0.4
PHRF1-201ENST00000264555 WHRNQ9P202 907 aa17.55■□□□□ 0.4
PHRF1-201ENST00000264555 ROBO3Q96MS0 1386 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 ZBTB39O15060 712 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 AFG1LQ8WV93 481 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 AKT1S1Q96B36 256 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 SEC16BQ96JE7 1060 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 SPATC1LQ9H0A9 340 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 UBN1Q9NPG3 1134 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 GOLGA8RI6L899 631 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 SOX10P56693 466 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 SP110Q9HB58 689 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 UBQLN1Q9UMX0 589 aaKnown RBP17.54■□□□□ 0.4
PHRF1-201ENST00000264555 CCDC22O60826 627 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 STIP1P31948 543 aaKnown RBP17.54■□□□□ 0.4
PHRF1-201ENST00000264555 MTHFD1LQ6UB35 978 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 GLIS3Q8NEA6 775 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 FRMD8Q9BZ67 464 aaPredicted RBP17.54■□□□□ 0.4
PHRF1-201ENST00000264555 DDX3XO00571 662 aaKnown RBP eCLIP17.54■□□□□ 0.45e-9■□□□□ 8.7
PHRF1-201ENST00000264555 TRAPPC3O43617 180 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 RPS6KA5O75582 802 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 CYP2C8P10632 490 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 VDRP11473 427 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 SERPINB9P50453 376 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 GCNT1Q02742 428 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 SYCP2LQ5T4T6 812 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 FOXR2Q6PJQ5 311 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 SPATA2LQ8IUW3 424 aaPredicted RBP17.54■□□□□ 0.4
PHRF1-201ENST00000264555 C4orf33Q8N1A6 199 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 BAG5Q9UL15 447 aa17.54■□□□□ 0.4
PHRF1-201ENST00000264555 FAM208AQ9UK61 1670 aaKnown RBP17.53■□□□□ 0.4
PHRF1-201ENST00000264555 NID2Q14112 1375 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 ITGA4P13612 1032 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 RARGP13631 454 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 PARP9Q8IXQ6 854 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 CHMP2BQ9UQN3 213 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 DFFAO00273 331 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 GTF2A2P52657 109 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 DEUP1Q05D60 604 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 C2CD6Q53TS8 623 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 ARHGEF19Q8IW93 802 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 GCNAQ96QF7 691 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 MYCBPQ99417 103 aaPredicted RBP17.53■□□□□ 0.4
PHRF1-201ENST00000264555 MMTAG2Q9BU76 263 aaKnown RBP17.53■□□□□ 0.4
PHRF1-201ENST00000264555 CPSF2Q9P2I0 782 aaKnown RBP17.53■□□□□ 0.4
PHRF1-201ENST00000264555 CYP2B6P20813 491 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 CPT1AP50416 773 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 SEC24CP53992 1094 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 PTENP60484 403 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 BTNL9Q6UXG8 535 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 FBXO16Q8IX29 292 aaPredicted RBP17.53■□□□□ 0.4
PHRF1-201ENST00000264555 MIPOL1Q8TD10 442 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.53■□□□□ 0.4
PHRF1-201ENST00000264555 XRN1Q8IZH2 1706 aaKnown RBP17.53■□□□□ 0.4
PHRF1-201ENST00000264555 TAF6P49848 677 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 MAP4K3Q8IVH8 894 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 EXD1Q8NHP7 514 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 ATG4AQ8WYN0 398 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 TATDN2Q93075 761 aa17.53■□□□□ 0.4
PHRF1-201ENST00000264555 EEF2KO00418 725 aaKnown RBP17.52■□□□□ 0.4
PHRF1-201ENST00000264555 ATP9BO43861 1147 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 GCKP35557 465 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 OCRLQ01968 901 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 MCL1Q07820 350 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 DNAAF5Q86Y56 855 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 ABRAQ8N0Z2 381 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 FAM71DQ8N9W8 422 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 WWP1Q9H0M0 922 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 TMBIM4Q9HC24 238 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 PSMD3O43242 534 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 PCSK1P29120 753 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 GRIK1P39086 918 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 CASP5P51878 434 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 LAMTOR4Q0VGL1 99 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 PDK1Q15118 436 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 TFDP3Q5H9I0 405 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 KRT35Q92764 455 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 EXT2Q93063 718 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 CISHQ9NSE2 258 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 VIRMAQ69YN4 1812 aaKnown RBP17.52■□□□□ 0.4
PHRF1-201ENST00000264555 TBC1D12O60347 775 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 CTSHP09668 335 aa17.52■□□□□ 0.4
PHRF1-201ENST00000264555 STAG3L1P0CL83 205 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms