RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C YCL012CQ8J0M4 134 aa1.41□□□□□ -2.18
RUB1YDR139C CWC21Q03375 135 aaKnown RBP1.4□□□□□ -2.19
RUB1YDR139C ABP140Q08641 628 aaKnown RBP1.4□□□□□ -2.19
RUB1YDR139C YAR023CD6VPM8 179 aa1.39□□□□□ -2.19
RUB1YDR139C AQY2P0CD90 149 aa1.39□□□□□ -2.19
RUB1YDR139C YHL042WP38729 150 aa1.39□□□□□ -2.19
RUB1YDR139C YEL067CP39978 195 aa1.39□□□□□ -2.19
RUB1YDR139C HYR1P40581 163 aaKnown RBP1.39□□□□□ -2.19
RUB1YDR139C ARP3P47117 449 aaKnown RBP1.39□□□□□ -2.19
RUB1YDR139C CGR1P53188 120 aa1.39□□□□□ -2.19
RUB1YDR139C YMR295CQ03559 197 aa1.39□□□□□ -2.19
RUB1YDR139C SOK1P40317 901 aa1.38□□□□□ -2.19
RUB1YDR139C YFL065CP43539 102 aa1.38□□□□□ -2.19
RUB1YDR139C YMR099CQ03161 297 aaKnown RBP1.38□□□□□ -2.19
RUB1YDR139C IRC23Q08416 157 aa1.38□□□□□ -2.19
RUB1YDR139C GET4Q12125 312 aa1.38□□□□□ -2.19
RUB1YDR139C QCR7P00128 127 aa1.37□□□□□ -2.19
RUB1YDR139C MTW1P39731 289 aa1.37□□□□□ -2.19
RUB1YDR139C NOP19P53317 196 aaPredicted RBP1.37□□□□□ -2.19
RUB1YDR139C DAD4P69851 72 aa1.37□□□□□ -2.19
RUB1YDR139C PRP11Q07350 266 aaPredicted RBP1.37□□□□□ -2.19
RUB1YDR139C YLR031WQ07978 186 aa1.37□□□□□ -2.19
RUB1YDR139C YLR036CQ07986 203 aa1.37□□□□□ -2.19
RUB1YDR139C ADF1Q2V2Q1 113 aa1.37□□□□□ -2.19
RUB1YDR139C YHL018WP38744 120 aaPredicted RBP1.36□□□□□ -2.19
RUB1YDR139C YFH7P43591 353 aa1.36□□□□□ -2.19
RUB1YDR139C YMR007WQ03675 126 aa1.36□□□□□ -2.19
RUB1YDR139C SHH3Q04487 196 aa1.36□□□□□ -2.19
RUB1YDR139C YOL014WQ08110 124 aa1.36□□□□□ -2.19
RUB1YDR139C JIP3O13555 125 aa1.35□□□□□ -2.19
RUB1YDR139C SNF4P12904 322 aa1.35□□□□□ -2.19
RUB1YDR139C PHO85P17157 305 aa1.35□□□□□ -2.19
RUB1YDR139C YJR111CP47148 283 aaKnown RBP1.35□□□□□ -2.19
RUB1YDR139C UBC12P52491 188 aa1.35□□□□□ -2.19
RUB1YDR139C YNL184CP53876 108 aa1.35□□□□□ -2.19
RUB1YDR139C IGO2Q9P305 131 aa1.35□□□□□ -2.19
RUB1YDR139C HPA3P39979 161 aa1.34□□□□□ -2.19
RUB1YDR139C RTC4P53850 401 aa1.34□□□□□ -2.19
RUB1YDR139C YMR252CQ04814 134 aa1.34□□□□□ -2.19
RUB1YDR139C YMR315WQ04869 349 aaKnown RBP1.34□□□□□ -2.19
RUB1YDR139C RNH202Q05635 350 aa1.34□□□□□ -2.19
RUB1YDR139C YPR013CQ12145 317 aa1.34□□□□□ -2.19
RUB1YDR139C YML100W-AQ8TGT0 57 aa1.34□□□□□ -2.19
RUB1YDR139C COX8P04039 78 aa1.33□□□□□ -2.2
RUB1YDR139C YHR212W-AP0CX91 67 aa1.33□□□□□ -2.2
RUB1YDR139C TMA22P47089 198 aaPredicted RBP1.33□□□□□ -2.2
RUB1YDR139C TDA4P47153 279 aa1.33□□□□□ -2.2
RUB1YDR139C RPL37AP49166 88 aaKnown RBP1.33□□□□□ -2.2
RUB1YDR139C NSP1P14907 823 aaKnown RBP1.32□□□□□ -2.2
RUB1YDR139C MGT1P26188 188 aa1.32□□□□□ -2.2
RUB1YDR139C SFK1P35735 353 aa1.32□□□□□ -2.2
RUB1YDR139C PAM17P36147 197 aa1.32□□□□□ -2.2
RUB1YDR139C PDS1P40316 373 aaPredicted RBP1.32□□□□□ -2.2
RUB1YDR139C CUP9P41817 306 aa1.32□□□□□ -2.2
RUB1YDR139C NAT3Q06504 195 aa1.32□□□□□ -2.2
RUB1YDR139C FIT2Q08906 153 aa1.32□□□□□ -2.2
RUB1YDR139C RPB7P34087 171 aa1.31□□□□□ -2.2
RUB1YDR139C FMP23P38231 175 aa1.31□□□□□ -2.2
RUB1YDR139C THG1P53215 237 aaKnown RBP1.31□□□□□ -2.2
RUB1YDR139C YNL033WP53964 284 aa1.31□□□□□ -2.2
RUB1YDR139C ARO80Q04052 950 aa1.31□□□□□ -2.2
RUB1YDR139C TIR1P10863 254 aa1.3□□□□□ -2.2
RUB1YDR139C ARO7P32178 256 aa1.3□□□□□ -2.2
RUB1YDR139C UPS3Q04006 179 aa1.3□□□□□ -2.2
RUB1YDR139C YMR253CQ04835 414 aa1.3□□□□□ -2.2
RUB1YDR139C YOL024WQ08172 172 aa1.3□□□□□ -2.2
RUB1YDR139C YCL042WP25572 119 aa1.29□□□□□ -2.2
RUB1YDR139C GSP2P32836 220 aaKnown RBP1.29□□□□□ -2.2
RUB1YDR139C SPC25P40014 221 aa1.29□□□□□ -2.2
RUB1YDR139C HUA1P40325 198 aa1.29□□□□□ -2.2
RUB1YDR139C YFL019CP43576 117 aa1.29□□□□□ -2.2
RUB1YDR139C ALB1P47019 175 aaPredicted RBP1.29□□□□□ -2.2
RUB1YDR139C VPS71Q03433 280 aa1.29□□□□□ -2.2
RUB1YDR139C YDL085C-AQ3E7B7 68 aaKnown RBP1.29□□□□□ -2.2
RUB1YDR139C RPS24AP0CX31 135 aaKnown RBP1.28□□□□□ -2.2
RUB1YDR139C RPS24BP0CX32 135 aaKnown RBP1.28□□□□□ -2.2
RUB1YDR139C IDP1P21954 428 aaKnown RBP1.28□□□□□ -2.2
RUB1YDR139C YEL008WP40001 126 aa1.28□□□□□ -2.2
RUB1YDR139C RAD9P14737 1309 aa1.27□□□□□ -2.21
RUB1YDR139C CAF4P36130 643 aa1.27□□□□□ -2.21
RUB1YDR139C YPR014CQ6B0W2 109 aa1.27□□□□□ -2.21
RUB1YDR139C TAH1P25638 111 aaPredicted RBP1.26□□□□□ -2.21
RUB1YDR139C ADE1P27616 306 aa1.26□□□□□ -2.21
RUB1YDR139C PGA1P53896 198 aa1.26□□□□□ -2.21
RUB1YDR139C NOC4Q06512 552 aaPredicted RBP1.26□□□□□ -2.21
RUB1YDR139C YOR342CQ12182 319 aa1.26□□□□□ -2.21
RUB1YDR139C YLR412C-AQ3E742 68 aa1.26□□□□□ -2.21
RUB1YDR139C COA3Q3E7B2 85 aa1.26□□□□□ -2.21
RUB1YDR139C TRX3P25372 127 aa1.25□□□□□ -2.21
RUB1YDR139C NSG1P38837 291 aa1.25□□□□□ -2.21
RUB1YDR139C GPI14P47088 403 aaKnown RBP1.25□□□□□ -2.21
RUB1YDR139C DIG2Q03373 323 aaKnown RBP1.25□□□□□ -2.21
RUB1YDR139C FAS1P07149 2051 aaKnown RBP1.25□□□□□ -2.21
RUB1YDR139C YCR023CP25351 611 aa1.24□□□□□ -2.21
RUB1YDR139C YLR460CP54007 376 aa1.24□□□□□ -2.21
RUB1YDR139C AIM34Q03673 198 aa1.24□□□□□ -2.21
RUB1YDR139C NSA2P40078 261 aaKnown RBP1.23□□□□□ -2.21
RUB1YDR139C RPL37BP51402 88 aaKnown RBP1.23□□□□□ -2.21
RUB1YDR139C NRK1P53915 240 aa1.23□□□□□ -2.21
RUB1YDR139C RRP17Q04031 235 aaPredicted RBP1.23□□□□□ -2.21
Retrieved 100 of 5,963 RNA–protein pairs in 11.3 ms