RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 TMEM169Q96HH4 297 aa13.2□□□□□ -0.3
LINC00339-213ENST00000642137 TGS1Q96RS0 853 aaKnown RBP13.2□□□□□ -0.3
LINC00339-213ENST00000642137 MMS19Q96T76 1030 aa13.2□□□□□ -0.3
LINC00339-213ENST00000642137 NAA15Q9BXJ9 866 aaKnown RBP13.2□□□□□ -0.3
LINC00339-213ENST00000642137 BCO2Q9BYV7 579 aa13.2□□□□□ -0.3
LINC00339-213ENST00000642137 GPR62Q9BZJ7 368 aa13.2□□□□□ -0.3
LINC00339-213ENST00000642137 NIF3L1Q9GZT8 377 aa13.2□□□□□ -0.3
LINC00339-213ENST00000642137 GANQ9H2C0 597 aa13.2□□□□□ -0.3
LINC00339-213ENST00000642137 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.2□□□□□ -0.3
LINC00339-213ENST00000642137 DNAJC12Q9UKB3 198 aa13.2□□□□□ -0.3
LINC00339-213ENST00000642137 DSEQ9UL01 958 aa13.2□□□□□ -0.3
LINC00339-213ENST00000642137 PCDHB8Q9UN66 801 aa13.2□□□□□ -0.3
LINC00339-213ENST00000642137 POLIQ9UNA4 740 aa13.2□□□□□ -0.3
LINC00339-213ENST00000642137 NLRC5Q86WI3 1866 aa13.2□□□□□ -0.3
LINC00339-213ENST00000642137 SF3B1O75533 1304 aaKnown RBP eCLIP13.19□□□□□ -0.3
LINC00339-213ENST00000642137 FGF18O76093 207 aa13.19□□□□□ -0.3
LINC00339-213ENST00000642137 CLSTN1O94985 981 aa13.19□□□□□ -0.3
LINC00339-213ENST00000642137 CYP11A1P05108 521 aa13.19□□□□□ -0.3
LINC00339-213ENST00000642137 ODC1P11926 461 aa13.19□□□□□ -0.3
LINC00339-213ENST00000642137 CDC25BP30305 580 aa13.19□□□□□ -0.3
LINC00339-213ENST00000642137 ASPAP45381 313 aa13.19□□□□□ -0.3
LINC00339-213ENST00000642137 POLR2FP61218 127 aaKnown RBP13.19□□□□□ -0.3
LINC00339-213ENST00000642137 YWHAEP62258 255 aaKnown RBP13.19□□□□□ -0.3
LINC00339-213ENST00000642137 APBA1Q02410 837 aa13.19□□□□□ -0.3
LINC00339-213ENST00000642137 PTPN21Q16825 1174 aa13.19□□□□□ -0.3
LINC00339-213ENST00000642137 SOWAHAQ2M3V2 549 aa13.19□□□□□ -0.3
LINC00339-213ENST00000642137 PRPF38BQ5VTL8 546 aaKnown RBP13.19□□□□□ -0.3
LINC00339-213ENST00000642137 SPECC1LQ69YQ0 1117 aa13.19□□□□□ -0.3
LINC00339-213ENST00000642137 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.19□□□□□ -0.3
LINC00339-213ENST00000642137 TMEM173Q86WV6 379 aaPredicted RBP13.19□□□□□ -0.3
LINC00339-213ENST00000642137 KLHL23Q8NBE8 558 aa13.19□□□□□ -0.3
LINC00339-213ENST00000642137 HASPINQ8TF76 798 aa13.19□□□□□ -0.3
LINC00339-213ENST00000642137 BCL7CQ8WUZ0 217 aaPredicted RBP13.19□□□□□ -0.3
LINC00339-213ENST00000642137 STK33Q9BYT3 514 aa13.19□□□□□ -0.3
LINC00339-213ENST00000642137 NKX2-4Q9H2Z4 354 aa13.19□□□□□ -0.3
LINC00339-213ENST00000642137 FAM207AQ9NSI2 230 aaPredicted RBP13.19□□□□□ -0.3
LINC00339-213ENST00000642137 PUF60Q9UHX1 559 aaKnown RBP13.19□□□□□ -0.3
LINC00339-213ENST00000642137 COLQQ9Y215 455 aaPredicted RBP13.19□□□□□ -0.3
LINC00339-213ENST00000642137 LZTS1Q9Y250 596 aa13.19□□□□□ -0.3
LINC00339-213ENST00000642137 A0A1W2PQJ5 194 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 GABRDO14764 452 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 ARHGEF15O94989 841 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 SOD2P04179 222 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 WEE2P0C1S8 567 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 TRIM21P19474 475 aaKnown RBP13.18□□□□□ -0.3
LINC00339-213ENST00000642137 FGFR3P22607 806 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 WARSP23381 471 aaKnown RBP13.18□□□□□ -0.3
LINC00339-213ENST00000642137 CTNNB1P35222 781 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 GNL1P36915 607 aaPredicted RBP13.18□□□□□ -0.3
LINC00339-213ENST00000642137 LHX1P48742 406 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 CDH8P55286 799 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 UBE3AQ05086 875 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 TRIM14Q14142 442 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 MRPL58Q14197 206 aaKnown RBP13.18□□□□□ -0.3
LINC00339-213ENST00000642137 USP41Q3LFD5 358 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 FAM171A1Q5VUB5 890 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 IQCEQ6IPM2 695 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 GJB7Q6PEY0 223 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.18□□□□□ -0.3
LINC00339-213ENST00000642137 METTL23Q86XA0 190 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 GPR65Q8IYL9 337 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 KREMEN1Q96MU8 473 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 C17orf80Q9BSJ5 609 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 TTYH3Q9C0H2 523 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 SDCBP2Q9H190 292 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 SLC28A3Q9HAS3 691 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 CHST7Q9NS84 486 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 CEP72Q9P209 647 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 MYO6Q9UM54 1294 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 L1RE1Q9UN81 338 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 FHOD1Q9Y613 1164 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 CEP290O15078 2479 aa13.18□□□□□ -0.3
LINC00339-213ENST00000642137 I3L4J1 428 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 EPHB6O15197 1021 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 OAZ2O95190 189 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 ACO1P21399 889 aaKnown RBP13.17□□□□□ -0.3
LINC00339-213ENST00000642137 INCA1Q0VD86 236 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 TBX2Q13207 712 aaPredicted RBP13.17□□□□□ -0.3
LINC00339-213ENST00000642137 DRAP1Q14919 205 aaPredicted RBP13.17□□□□□ -0.3
LINC00339-213ENST00000642137 ARHGAP44Q17R89 818 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 WSCD1Q658N2 575 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 TAS1R1Q7RTX1 841 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 CACNA2D4Q7Z3S7 1137 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 TMC6Q7Z403 805 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 UNC93AQ86WB7 457 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 THEM5Q8N1Q8 247 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 PDCL2Q8N4E4 241 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 UBR7Q8N806 425 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 SPPL3Q8TCT6 385 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 KAT5Q92993 513 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 TTPALQ9BTX7 342 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 C11orf84Q9BUA3 381 aaPredicted RBP13.17□□□□□ -0.3
LINC00339-213ENST00000642137 HERC2P3Q9BVR0 1158 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 OXCT2Q9BYC2 517 aaPredicted RBP13.17□□□□□ -0.3
LINC00339-213ENST00000642137 SNX25Q9H3E2 840 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 SMYD3Q9H7B4 428 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 CISHQ9NSE2 258 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 BARX2Q9UMQ3 279 aaPredicted RBP13.17□□□□□ -0.3
LINC00339-213ENST00000642137 CAPN11Q9UMQ6 739 aa13.17□□□□□ -0.3
LINC00339-213ENST00000642137 CNTN6Q9UQ52 1028 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms