RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 LILRA4P59901 499 aa17.53■□□□□ 0.4
CLN3-246ENST00000636228 KYAT1Q16773 422 aa17.53■□□□□ 0.4
CLN3-246ENST00000636228 CENPPQ6IPU0 288 aa17.53■□□□□ 0.4
CLN3-246ENST00000636228 TTC8Q8TAM2 541 aa17.53■□□□□ 0.4
CLN3-246ENST00000636228 RAD54LQ92698 747 aa17.53■□□□□ 0.4
CLN3-246ENST00000636228 SENP8Q96LD8 212 aa17.53■□□□□ 0.4
CLN3-246ENST00000636228 FIZ1Q96SL8 496 aa17.53■□□□□ 0.4
CLN3-246ENST00000636228 LMAN1LQ9HAT1 526 aa17.53■□□□□ 0.4
CLN3-246ENST00000636228 PCDHGA2Q9Y5H1 932 aa17.53■□□□□ 0.4
CLN3-246ENST00000636228 MTMR11A4FU01 709 aa17.52■□□□□ 0.4
CLN3-246ENST00000636228 TULP1O00294 542 aaPredicted RBP17.52■□□□□ 0.4
CLN3-246ENST00000636228 XPOTO43592 962 aaKnown RBP17.52■□□□□ 0.4
CLN3-246ENST00000636228 CCNE1P24864 410 aa17.52■□□□□ 0.4
CLN3-246ENST00000636228 ALDH1A3P47895 512 aa17.52■□□□□ 0.4
CLN3-246ENST00000636228 SOX9P48436 509 aa17.52■□□□□ 0.4
CLN3-246ENST00000636228 SF3A1Q15459 793 aaKnown RBP17.52■□□□□ 0.4
CLN3-246ENST00000636228 C9orf57Q5W0N0 161 aa17.52■□□□□ 0.4
CLN3-246ENST00000636228 USP49Q70CQ1 688 aa17.52■□□□□ 0.4
CLN3-246ENST00000636228 MFSD6LQ8IWD5 586 aa17.52■□□□□ 0.4
CLN3-246ENST00000636228 LEMD2Q8NC56 503 aa17.52■□□□□ 0.4
CLN3-246ENST00000636228 ZBTB44Q8NCP5 570 aa17.52■□□□□ 0.4
CLN3-246ENST00000636228 OR10T2Q8NGX3 314 aa17.52■□□□□ 0.4
CLN3-246ENST00000636228 TRPV4Q9HBA0 871 aa17.52■□□□□ 0.4
CLN3-246ENST00000636228 ZSCAN32Q9NX65 697 aa17.52■□□□□ 0.4
CLN3-246ENST00000636228 NCDNQ9UBB6 729 aa17.52■□□□□ 0.4
CLN3-246ENST00000636228 WDR87Q6ZQQ6 2873 aa17.52■□□□□ 0.39
CLN3-246ENST00000636228 DCHS1Q96JQ0 3298 aa17.52■□□□□ 0.39
CLN3-246ENST00000636228 CACNA1IQ9P0X4 2223 aa17.51■□□□□ 0.39
CLN3-246ENST00000636228 TBCAO75347 108 aaKnown RBP17.51■□□□□ 0.39
CLN3-246ENST00000636228 ODC1P11926 461 aa17.51■□□□□ 0.39
CLN3-246ENST00000636228 TYMPP19971 482 aa17.51■□□□□ 0.39
CLN3-246ENST00000636228 LONP1P36776 959 aaKnown RBP17.51■□□□□ 0.39
CLN3-246ENST00000636228 GTF2BQ00403 316 aa17.51■□□□□ 0.39
CLN3-246ENST00000636228 ARMCX5Q6P1M9 558 aa17.51■□□□□ 0.39
CLN3-246ENST00000636228 DNAJB7Q7Z6W7 309 aaPredicted RBP17.51■□□□□ 0.39
CLN3-246ENST00000636228 ARID3BQ8IVW6 561 aaPredicted RBP17.51■□□□□ 0.39
CLN3-246ENST00000636228 DEPDC1BQ8WUY9 529 aa17.51■□□□□ 0.39
CLN3-246ENST00000636228 NELL1Q92832 810 aa17.51■□□□□ 0.39
CLN3-246ENST00000636228 KCNN1Q92952 543 aa17.51■□□□□ 0.39
CLN3-246ENST00000636228 LRRC3BQ96PB8 259 aa17.51■□□□□ 0.39
CLN3-246ENST00000636228 OXCT2Q9BYC2 517 aaPredicted RBP17.51■□□□□ 0.39
CLN3-246ENST00000636228 PRMT8Q9NR22 394 aaPredicted RBP17.51■□□□□ 0.39
CLN3-246ENST00000636228 EP300Q09472 2414 aaPredicted RBP17.51■□□□□ 0.39
CLN3-246ENST00000636228 MED19A0JLT2 244 aaPredicted RBP17.5■□□□□ 0.39
CLN3-246ENST00000636228 SLC38A8A6NNN8 435 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 ARNTLO00327 626 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 PIRO00625 290 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 SLC26A4O43511 780 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 LILRB5O75023 590 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 PLD1Q13393 1074 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 MYBPC2Q14324 1141 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 TMEM132DQ14C87 1099 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 SLC39A12Q504Y0 691 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 ADALQ6DHV7 355 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 GAREM2Q75VX8 874 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 DYMQ7RTS9 669 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 DGLUCYQ7Z3D6 616 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 YAF2Q8IY57 180 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 EPSTI1Q96J88 318 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 ZFYVE19Q96K21 471 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 SEPT5Q99719 369 aaPredicted RBP17.5■□□□□ 0.39
CLN3-246ENST00000636228 LPIN3Q9BQK8 851 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 MKNK1Q9BUB5 465 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 GPR88Q9GZN0 384 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 CHRDQ9H2X0 955 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 ATXN3LQ9H3M9 355 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 TRPV5Q9NQA5 729 aa17.5■□□□□ 0.39
CLN3-246ENST00000636228 RBM12Q9NTZ6 932 aaKnown RBP17.5■□□□□ 0.39
CLN3-246ENST00000636228 SMG5Q9UPR3 1016 aaKnown RBP17.5■□□□□ 0.39
CLN3-246ENST00000636228 ANO9A1A5B4 782 aa17.49■□□□□ 0.39
CLN3-246ENST00000636228 CHRNB1P11230 501 aa17.49■□□□□ 0.39
CLN3-246ENST00000636228 GABRR2P28476 465 aa17.49■□□□□ 0.39
CLN3-246ENST00000636228 DDIT3P35638 169 aa17.49■□□□□ 0.39
CLN3-246ENST00000636228 GAS6Q14393 721 aa17.49■□□□□ 0.39
CLN3-246ENST00000636228 LPAL2Q16609 132 aa17.49■□□□□ 0.39
CLN3-246ENST00000636228 RSPO4Q2I0M5 234 aaPredicted RBP17.49■□□□□ 0.39
CLN3-246ENST00000636228 CD302Q8IX05 232 aa17.49■□□□□ 0.39
CLN3-246ENST00000636228 FAM200AQ8TCP9 573 aa17.49■□□□□ 0.39
CLN3-246ENST00000636228 CSGALNACT1Q8TDX6 532 aa17.49■□□□□ 0.39
CLN3-246ENST00000636228 LARP4BQ92615 738 aaKnown RBP17.49■□□□□ 0.39
CLN3-246ENST00000636228 PSMG2Q969U7 264 aa17.49■□□□□ 0.39
CLN3-246ENST00000636228 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.49■□□□□ 0.39
CLN3-246ENST00000636228 CLIC4Q9Y696 253 aa17.49■□□□□ 0.39
CLN3-246ENST00000636228 ZNF292O60281 2723 aa17.49■□□□□ 0.39
CLN3-246ENST00000636228 VPS37CA5D8V6 355 aaPredicted RBP17.48■□□□□ 0.39
CLN3-246ENST00000636228 CYB561D2O14569 222 aa17.48■□□□□ 0.39
CLN3-246ENST00000636228 TDGF1P13385 188 aa17.48■□□□□ 0.39
CLN3-246ENST00000636228 KPNA1P52294 538 aaPredicted RBP17.48■□□□□ 0.39
CLN3-246ENST00000636228 CYP4F8P98187 520 aa17.48■□□□□ 0.39
CLN3-246ENST00000636228 SATB1Q01826 763 aa17.48■□□□□ 0.39
CLN3-246ENST00000636228 MGAT5BQ3V5L5 792 aa17.48■□□□□ 0.39
CLN3-246ENST00000636228 WDR44Q5JSH3 913 aa17.48■□□□□ 0.39
CLN3-246ENST00000636228 GPR158Q5T848 1215 aa17.48■□□□□ 0.39
CLN3-246ENST00000636228 CRELD2Q6UXH1 353 aaPredicted RBP17.48■□□□□ 0.39
CLN3-246ENST00000636228 LRRTM3Q86VH5 581 aa17.48■□□□□ 0.39
CLN3-246ENST00000636228 SFR1Q86XK3 245 aa17.48■□□□□ 0.39
CLN3-246ENST00000636228 GIPC2Q8TF65 315 aa17.48■□□□□ 0.39
CLN3-246ENST00000636228 TSPAN18Q96SJ8 248 aa17.48■□□□□ 0.39
CLN3-246ENST00000636228 PYM1Q9BRP8 204 aaKnown RBP17.48■□□□□ 0.39
CLN3-246ENST00000636228 SMG9Q9H0W8 520 aaKnown RBP17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms