RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 FNBP1Q96RU3 617 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 POP1Q99575 1024 aaKnown RBP11.43□□□□□ -0.58
UPF3A-212ENST00000619079 UBA5Q9GZZ9 404 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 UVRAGQ9P2Y5 699 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 DNM3Q9UQ16 869 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 MTO1Q9Y2Z2 717 aaKnown RBP11.43□□□□□ -0.58
UPF3A-212ENST00000619079 CFAP69A5D8W1 941 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 TCP10L2B9ZVM9 353 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 EIF3DO15371 548 aaKnown RBP eCLIP11.43□□□□□ -0.58
UPF3A-212ENST00000619079 CLDN3O15551 220 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 CIB2O75838 187 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 ASLP04424 464 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 CYP1A1P04798 512 aaPredicted RBP11.43□□□□□ -0.58
UPF3A-212ENST00000619079 GAP43P17677 238 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 MYL7Q01449 175 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 CENPCQ03188 943 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 PICALMQ13492 652 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 THOC5Q13769 683 aaKnown RBP11.43□□□□□ -0.58
UPF3A-212ENST00000619079 FAM91A1Q658Y4 838 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 CDC42EP5Q6NZY7 148 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 NET1Q7Z628 596 aaPredicted RBP11.43□□□□□ -0.58
UPF3A-212ENST00000619079 SPATA24Q86W54 205 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 SULF1Q8IWU6 871 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 ZNF564Q8TBZ8 553 aaPredicted RBP11.43□□□□□ -0.58
UPF3A-212ENST00000619079 C1orf54Q8WWF1 131 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 IRGQQ8WZA9 623 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 REEP2Q9BRK0 252 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 KIAA1586Q9HCI6 787 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 ARL8BQ9NVJ2 186 aa11.43□□□□□ -0.58
UPF3A-212ENST00000619079 DNAJC17Q9NVM6 304 aaKnown RBP11.43□□□□□ -0.58
UPF3A-212ENST00000619079 ZNF646O15015 1829 aaPredicted RBP11.42□□□□□ -0.58
UPF3A-212ENST00000619079 BTBD19C9JJ37 291 aa11.42□□□□□ -0.58
UPF3A-212ENST00000619079 ZBED4O75132 1171 aa11.42□□□□□ -0.58
UPF3A-212ENST00000619079 GCNT3O95395 438 aa11.42□□□□□ -0.58
UPF3A-212ENST00000619079 RPA3P35244 121 aaPredicted RBP11.42□□□□□ -0.58
UPF3A-212ENST00000619079 PGM1P36871 562 aa11.42□□□□□ -0.58
UPF3A-212ENST00000619079 RGS2P41220 211 aa11.42□□□□□ -0.58
UPF3A-212ENST00000619079 MAGEA4P43358 317 aa11.42□□□□□ -0.58
UPF3A-212ENST00000619079 SCNN1BP51168 640 aa11.42□□□□□ -0.58
UPF3A-212ENST00000619079 ZBTB16Q05516 673 aa11.42□□□□□ -0.58
UPF3A-212ENST00000619079 MTA1Q13330 715 aa11.42□□□□□ -0.58
UPF3A-212ENST00000619079 SEPT7Q16181 437 aaKnown RBP11.42□□□□□ -0.58
UPF3A-212ENST00000619079 MAP1SQ66K74 1059 aaPredicted RBP11.42□□□□□ -0.58
UPF3A-212ENST00000619079 KLC3Q6P597 504 aa11.42□□□□□ -0.58
UPF3A-212ENST00000619079 LDHDQ86WU2 507 aa11.42□□□□□ -0.58
UPF3A-212ENST00000619079 ZCCHC9Q8N567 271 aaKnown RBP11.42□□□□□ -0.58
UPF3A-212ENST00000619079 NEDD1Q8NHV4 660 aa11.42□□□□□ -0.58
UPF3A-212ENST00000619079 WDR60Q8WVS4 1066 aa11.42□□□□□ -0.58
UPF3A-212ENST00000619079 MAML3Q96JK9 1138 aa11.42□□□□□ -0.58
UPF3A-212ENST00000619079 OLFML3Q9NRN5 406 aa11.42□□□□□ -0.58
UPF3A-212ENST00000619079 ZNF70Q9UC06 446 aaPredicted RBP11.42□□□□□ -0.58
UPF3A-212ENST00000619079 SCN4AP35499 1836 aa11.42□□□□□ -0.58
UPF3A-212ENST00000619079 TYROBPO43914 113 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 RARBP10826 455 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 PIM1P11309 404 aaPredicted RBP11.41□□□□□ -0.58
UPF3A-212ENST00000619079 ANPEPP15144 967 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 VAV1P15498 845 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 CLK2P49760 499 aaKnown RBP11.41□□□□□ -0.58
UPF3A-212ENST00000619079 USP46P62068 366 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 TCP10Q12799 353 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 HNRNPDQ14103 355 aaKnown RBP11.41□□□□□ -0.58
UPF3A-212ENST00000619079 ARHGAP44Q17R89 818 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 CERKLQ49MI3 558 aaPredicted RBP11.41□□□□□ -0.58
UPF3A-212ENST00000619079 ASPRV1Q53RT3 343 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 ANKS1BQ7Z6G8 1248 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 CCDC110Q8TBZ0 833 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 ZC3H15Q8WU90 426 aaKnown RBP11.41□□□□□ -0.58
UPF3A-212ENST00000619079 PSPC1Q8WXF1 523 aaKnown RBP11.41□□□□□ -0.58
UPF3A-212ENST00000619079 DDX27Q96GQ7 796 aaKnown RBP11.41□□□□□ -0.58
UPF3A-212ENST00000619079 C9orf72Q96LT7 481 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 RBM15Q96T37 977 aaKnown RBP eCLIP11.41□□□□□ -0.58
UPF3A-212ENST00000619079 DDX50Q9BQ39 737 aaKnown RBP11.41□□□□□ -0.58
UPF3A-212ENST00000619079 GPAMQ9HCL2 828 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 TAS2R1Q9NYW7 299 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 PTTG2Q9NZH5 202 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 HEY2Q9UBP5 337 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 SLC24A2Q9UI40 661 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 GRID1Q9ULK0 1009 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 ZNF510Q9Y2H8 683 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 FRMD4BQ9Y2L6 1034 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 CLIC2O15247 247 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 MED24O75448 989 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 TGDSO95455 350 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 ITGA2BP08514 1039 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 NEK3P51956 506 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 ARFIP2P53365 341 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 XIAPP98170 497 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 CDK16Q00536 496 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 CETN1Q12798 172 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 TNFAIP1Q13829 316 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 SPDYE2Q495Y8 402 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 LVRNQ6Q4G3 990 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 POTEGQ6S5H5 508 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 APOBEC3FQ8IUX4 373 aaKnown RBP11.41□□□□□ -0.58
UPF3A-212ENST00000619079 KCTD17Q8N5Z5 321 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.41□□□□□ -0.58
UPF3A-212ENST00000619079 GJA10Q969M2 543 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 SKA1Q96BD8 255 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 COA7Q96BR5 231 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 ZBED3Q96IU2 234 aaPredicted RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms