RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 BHMT2Q9H2M3 363 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 DSEQ9UL01 958 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 UBQLN1Q9UMX0 589 aaKnown RBP6.86□□□□□ -1.31
CUX1-220ENST00000607092 KIAA1024Q9UPX6 916 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 KIF3AQ9Y496 699 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 DSPP15924 2871 aaKnown RBP6.85□□□□□ -1.31
CUX1-220ENST00000607092 MYBPHLA2RUH7 354 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 FAM205CA6NFA0 338 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 I3L4J1 428 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 M0QZQ0 153 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 GPR37O15354 613 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 ODC1P11926 461 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 FDPSP14324 419 aaKnown RBP6.85□□□□□ -1.31
CUX1-220ENST00000607092 TYMPP19971 482 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 PROZP22891 400 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 CCNE1P24864 410 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 DDX6P26196 483 aaKnown RBP eCLIP6.85□□□□□ -1.319e-7■■■□□ 16.7
CUX1-220ENST00000607092 NPTX2P47972 431 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 HMGN5P82970 282 aaKnown RBP6.85□□□□□ -1.31
CUX1-220ENST00000607092 PPP2R3AQ06190 1150 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 GRSF1Q12849 480 aaKnown RBP eCLIP6.85□□□□□ -1.31
CUX1-220ENST00000607092 NOLC1Q14978 699 aaKnown RBP eCLIP6.85□□□□□ -1.311e-8■□□□□ 8.1
CUX1-220ENST00000607092 KARSQ15046 597 aaKnown RBP6.85□□□□□ -1.31
CUX1-220ENST00000607092 FBXO43Q4G163 708 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 NT5DC1Q5TFE4 455 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 NSUN7Q8NE18 718 aaKnown RBP6.85□□□□□ -1.31
CUX1-220ENST00000607092 ST13P5Q8NFI4 369 aaPredicted RBP6.85□□□□□ -1.31
CUX1-220ENST00000607092 BEST2Q8NFU1 509 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 SNX29Q8TEQ0 813 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 C2orf15Q8WU43 125 aaKnown RBP6.85□□□□□ -1.31
CUX1-220ENST00000607092 BSNDQ8WZ55 320 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 DDX12PQ92771 950 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 TCEAL4Q96EI5 215 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 C8orf76Q96K31 380 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 TBC1D32Q96NH3 1257 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 LLPHQ9BRT6 129 aaKnown RBP6.85□□□□□ -1.31
CUX1-220ENST00000607092 NTPCRQ9BSD7 190 aaKnown RBP6.85□□□□□ -1.31
CUX1-220ENST00000607092 PLA2G2FQ9BZM2 168 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 KIF9Q9HAQ2 790 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 GOLGA2P5Q9HBQ8 144 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 PTPRHQ9HD43 1115 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 PARD6AQ9NPB6 346 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 VPS45Q9NRW7 570 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 GJB4Q9NTQ9 266 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 LARSQ9P2J5 1176 aaKnown RBP6.85□□□□□ -1.31
CUX1-220ENST00000607092 ARHGAP28Q9P2N2 729 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 CACNG4Q9UBN1 327 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 YIPF1Q9Y548 306 aa6.85□□□□□ -1.31
CUX1-220ENST00000607092 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.85□□□□□ -1.31
CUX1-220ENST00000607092 CHURC1-FNTBB4DL54 471 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 SPECC1L-ADORA2AF8WAN1 911 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 ARNTLO00327 626 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 SLC26A4O43511 780 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 RPP40O75818 363 aaKnown RBP6.84□□□□□ -1.31
CUX1-220ENST00000607092 RHOBTB1O94844 696 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 CTDNEP1O95476 244 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 SEC24AO95486 1093 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 ZNF806P0C7X5 589 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 CCDC192P0DO97 292 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 GUCY2CP25092 1073 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 LRPAP1P30533 357 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 CTHP32929 405 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 AVPR1AP37288 418 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 PRPHP41219 470 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 VIPR2P41587 438 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 CCR2P41597 374 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 MATR3P43243 847 aaKnown RBP eCLIP6.84□□□□□ -1.316e-7■■■■□ 23.8
CUX1-220ENST00000607092 FNTBP49356 437 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 MCM2P49736 904 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 OSTNP61366 133 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 SHC2P98077 582 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 SATB1Q01826 763 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 MCL1Q07820 350 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 ELF2Q15723 593 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 ITPRIPL2Q3MIP1 535 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 TTC38Q5R3I4 469 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 OVOS1Q6IE37 1185 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 CD300LGQ6UXG3 332 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 DSTYKQ6XUX3 929 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 METTL23Q86XA0 190 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 ARID3BQ8IVW6 561 aaPredicted RBP6.84□□□□□ -1.31
CUX1-220ENST00000607092 THEM5Q8N1Q8 247 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 IGSF22Q8N9C0 903 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 FAM184AQ8NB25 1140 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 C3orf58Q8NDZ4 430 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 SHKBP1Q8TBC3 707 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 BPIFB1Q8TDL5 484 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 GAB3Q8WWW8 586 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 KCNN1Q92952 543 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 PSMG2Q969U7 264 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 ACDQ96AP0 544 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 TMEM209Q96SK2 561 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 KIFC3Q9BVG8 833 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 TARS2Q9BW92 718 aaKnown RBP6.84□□□□□ -1.31
CUX1-220ENST00000607092 TMEM121BQ9BXQ6 578 aaPredicted RBP6.84□□□□□ -1.31
CUX1-220ENST00000607092 TMEM60Q9H2L4 133 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 ATXN3LQ9H3M9 355 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 TASP1Q9H6P5 420 aa6.84□□□□□ -1.31
CUX1-220ENST00000607092 DDX19AQ9NUU7 478 aaKnown RBP6.84□□□□□ -1.31
CUX1-220ENST00000607092 PPP4R2Q9NY27 417 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms