RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	SPATA1	Q5VX52	437 aa		11.43	□□□□□ -0.58
LSM4-205	ENST00000597776	LARP1B	Q659C4	914 aa	Known RBP	11.43	□□□□□ -0.58
LSM4-205	ENST00000597776	OVOS1	Q6IE37	1185 aa		11.43	□□□□□ -0.58
LSM4-205	ENST00000597776	MAP4K3	Q8IVH8	894 aa		11.43	□□□□□ -0.58
LSM4-205	ENST00000597776	ATAD1	Q8NBU5	361 aa		11.43	□□□□□ -0.58
LSM4-205	ENST00000597776	LEMD2	Q8NC56	503 aa		11.43	□□□□□ -0.58
LSM4-205	ENST00000597776	SENP8	Q96LD8	212 aa		11.43	□□□□□ -0.58
LSM4-205	ENST00000597776	FIZ1	Q96SL8	496 aa		11.43	□□□□□ -0.58
LSM4-205	ENST00000597776	NELL2	Q99435	816 aa		11.43	□□□□□ -0.58
LSM4-205	ENST00000597776	LRRC3	Q9BY71	257 aa		11.43	□□□□□ -0.58
LSM4-205	ENST00000597776	ZNF334	Q9HCZ1	680 aa	Predicted RBP	11.43	□□□□□ -0.58
LSM4-205	ENST00000597776	CPSF3	Q9UKF6	684 aa	Known RBP	11.43	□□□□□ -0.58
LSM4-205	ENST00000597776	MRPS17	Q9Y2R5	130 aa	Known RBP	11.43	□□□□□ -0.58
LSM4-205	ENST00000597776	TICRR	Q7Z2Z1	1910 aa		11.43	□□□□□ -0.58
LSM4-205	ENST00000597776	TSC2	P49815	1807 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	MTMR11	A4FU01	709 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	HEPACAM2	A8MVW5	462 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	ZNF263	O14978	683 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	NCAM2	O15394	837 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	XPOT	O43592	962 aa	Known RBP	11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	TBCA	O75347	108 aa	Known RBP	11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	ODC1	P11926	461 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	TYMP	P19971	482 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	LONP1	P36776	959 aa	Known RBP	11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	EPHB3	P54753	998 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	GPR17	Q13304	367 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	TMEM132D	Q14C87	1099 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	SF3A1	Q15459	793 aa	Known RBP	11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	C9orf57	Q5W0N0	161 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	CENPP	Q6IPU0	288 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	USP49	Q70CQ1	688 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	ERMP1	Q7Z2K6	904 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	OR10T2	Q8NGX3	314 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	ATRIP	Q8WXE1	791 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	IRF7	Q92985	503 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	OXCT2	Q9BYC2	517 aa	Predicted RBP	11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	TRPV4	Q9HBA0	871 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	PRMT8	Q9NR22	394 aa	Predicted RBP	11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	PCDHGA2	Q9Y5H1	932 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	PIAS3	Q9Y6X2	628 aa		11.42	□□□□□ -0.58
LSM4-205	ENST00000597776	CACNA1A	O00555	2505 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	ANO9	A1A5B4	782 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	VPS37C	A5D8V6	355 aa	Predicted RBP	11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	ARNTL	O00327	626 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	MAN2B1	O00754	1011 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	BMP15	O95972	392 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	SCP2	P22307	547 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	ALDH1A3	P47895	512 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	SOX9	P48436	509 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	MCM2	P49736	904 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	GTF2B	Q00403	316 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	PLD1	Q13393	1074 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	MYBPC2	Q14324	1141 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	ADAL	Q6DHV7	355 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	GAREM2	Q75VX8	874 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	DYM	Q7RTS9	669 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	BRAP	Q7Z569	592 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	MFSD6L	Q8IWD5	586 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	ZBTB44	Q8NCP5	570 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	DEPDC1B	Q8WUY9	529 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	FAM3C	Q92520	227 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	LARP4B	Q92615	738 aa	Known RBP	11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	NELL1	Q92832	810 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	EPSTI1	Q96J88	318 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	MKNK1	Q9BUB5	465 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	CHRD	Q9H2X0	955 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	UPF2	Q9HAU5	1272 aa	Known RBP	11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	TRPV5	Q9NQA5	729 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	ZSCAN32	Q9NX65	697 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	NCDN	Q9UBB6	729 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	SMG5	Q9UPR3	1016 aa	Known RBP	11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	CLIC4	Q9Y696	253 aa		11.41	□□□□□ -0.58
LSM4-205	ENST00000597776	SLC38A8	A6NNN8	435 aa		11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	PIR	O00625	290 aa		11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	CCNE1	P24864	410 aa		11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	SLC39A12	Q504Y0	691 aa		11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	ARMCX5	Q6P1M9	558 aa		11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	SFR1	Q86XK3	245 aa		11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	ARID3B	Q8IVW6	561 aa	Predicted RBP	11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	CD302	Q8IX05	232 aa		11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	YAF2	Q8IY57	180 aa		11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	TTC8	Q8TAM2	541 aa		11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	PSMG2	Q969U7	264 aa		11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	ZFYVE19	Q96K21	471 aa		11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	LRRC3B	Q96PB8	259 aa		11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	TSPAN18	Q96SJ8	248 aa		11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	SEPT5	Q99719	369 aa	Predicted RBP	11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	LPIN3	Q9BQK8	851 aa		11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	GPR88	Q9GZN0	384 aa		11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	ATXN3L	Q9H3M9	355 aa		11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	LMAN1L	Q9HAT1	526 aa		11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	AGO2	Q9UKV8	859 aa	Known RBP	11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	DERA	Q9Y315	318 aa		11.4	□□□□□ -0.58
LSM4-205	ENST00000597776	ANK1	P16157	1881 aa		11.4	□□□□□ -0.59
LSM4-205	ENST00000597776	F5	P12259	2224 aa		11.39	□□□□□ -0.59
LSM4-205	ENST00000597776	MED19	A0JLT2	244 aa	Predicted RBP	11.39	□□□□□ -0.59
LSM4-205	ENST00000597776	TULP1	O00294	542 aa	Predicted RBP	11.39	□□□□□ -0.59

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