RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 KIAA1468Q9P260 1216 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 FBXL5Q9UKA1 691 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 PTPRJQ12913 1337 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 CCDC195A0A1B0GUA6 201 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 OR6C75A6NL08 312 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 PSMA7O14818 248 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 IKBKBO14920 756 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 CETN3O15182 167 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 PHACTR2O75167 634 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 ABLIM3O94929 683 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 KRT13P13646 458 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 ELF1P32519 619 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 MTHFRP42898 656 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 ARPP19P56211 112 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 LRRC63Q05C16 580 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 ENPEPQ07075 957 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 CBX2Q14781 532 aaPredicted RBP16.18■□□□□ 0.18
UPF1-202ENST00000594243 LIN9Q5TKA1 542 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 TMC5Q6UXY8 1006 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 INTS8Q75QN2 995 aaKnown RBP16.18■□□□□ 0.18
UPF1-202ENST00000594243 CMASQ8NFW8 434 aaPredicted RBP16.18■□□□□ 0.18
UPF1-202ENST00000594243 SUSD6Q92537 303 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 ZNF516Q92618 1163 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 UHRF1Q96T88 793 aaPredicted RBP16.18■□□□□ 0.18
UPF1-202ENST00000594243 GDAP2Q9NXN4 497 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 SIX4Q9UIU6 781 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 FBXW11Q9UKB1 542 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 MAFFQ9ULX9 164 aa16.18■□□□□ 0.18
UPF1-202ENST00000594243 LRRIQ3A6PVS8 624 aaPredicted RBP16.17■□□□□ 0.18
UPF1-202ENST00000594243 BIN1O00499 593 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 HUS1O60921 280 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 ZMYND10O75800 440 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 AKAP3O75969 853 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 CST3P01034 146 aaPredicted RBP16.17■□□□□ 0.18
UPF1-202ENST00000594243 ATF2P15336 505 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 CCNE1P24864 410 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 VAMP7P51809 220 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 FKBP3Q00688 224 aaKnown RBP16.17■□□□□ 0.18
UPF1-202ENST00000594243 ROR1Q01973 937 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 BFSP1Q12934 665 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 TRPC3Q13507 836 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 TPGS2Q68CL5 300 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 ANKRD40Q6AI12 368 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 CCDC149Q6ZUS6 474 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 DPH6Q7L8W6 267 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 GPR149Q86SP6 731 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 FAM186BQ8IYM0 893 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 TMEM86AQ8N2M4 240 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 HPDLQ96IR7 371 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 MKNK1Q9BUB5 465 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 RHOBTB2Q9BYZ6 727 aa16.17■□□□□ 0.18
UPF1-202ENST00000594243 GZF1Q9H116 711 aaPredicted RBP16.17■□□□□ 0.18
UPF1-202ENST00000594243 VWA8A3KMH1 1905 aa16.16■□□□□ 0.18
UPF1-202ENST00000594243 WDR27A2RRH5 827 aa16.16■□□□□ 0.18
UPF1-202ENST00000594243 PAPLNO95428 1278 aa16.16■□□□□ 0.18
UPF1-202ENST00000594243 C4BPAP04003 597 aaKnown RBP16.16■□□□□ 0.18
UPF1-202ENST00000594243 C8AP07357 584 aa16.16■□□□□ 0.18
UPF1-202ENST00000594243 CPB1P15086 417 aa16.16■□□□□ 0.18
UPF1-202ENST00000594243 ATICP31939 592 aa16.16■□□□□ 0.18
UPF1-202ENST00000594243 PPM1LQ5SGD2 360 aa16.16■□□□□ 0.18
UPF1-202ENST00000594243 ADHFE1Q8IWW8 467 aa16.16■□□□□ 0.18
UPF1-202ENST00000594243 TOP6BLQ8N6T0 577 aa16.16■□□□□ 0.18
UPF1-202ENST00000594243 PLEKHO2Q8TD55 490 aa16.16■□□□□ 0.18
UPF1-202ENST00000594243 FAM84AQ96KN4 292 aa16.16■□□□□ 0.18
UPF1-202ENST00000594243 PHF7Q9BWX1 381 aaPredicted RBP16.16■□□□□ 0.18
UPF1-202ENST00000594243 PRKD2Q9BZL6 878 aa16.16■□□□□ 0.18
UPF1-202ENST00000594243 CLSTN2Q9H4D0 955 aa16.16■□□□□ 0.18
UPF1-202ENST00000594243 PIDD1Q9HB75 910 aa16.16■□□□□ 0.18
UPF1-202ENST00000594243 SNX9Q9Y5X1 595 aa16.16■□□□□ 0.18
UPF1-202ENST00000594243 BDP1A6H8Y1 2624 aa16.16■□□□□ 0.18
UPF1-202ENST00000594243 MYO7AQ13402 2215 aa16.15■□□□□ 0.18
UPF1-202ENST00000594243 BICDL2A1A5D9 508 aa16.15■□□□□ 0.18
UPF1-202ENST00000594243 PPP1R3GB7ZBB8 358 aa16.15■□□□□ 0.18
UPF1-202ENST00000594243 RFPL2O75678 378 aa16.15■□□□□ 0.18
UPF1-202ENST00000594243 HNRNPA1P09651 372 aaKnown RBP eCLIP16.15■□□□□ 0.18
UPF1-202ENST00000594243 EPB41P11171 864 aaKnown RBP16.15■□□□□ 0.18
UPF1-202ENST00000594243 CD44P16070 742 aaKnown RBP16.15■□□□□ 0.18
UPF1-202ENST00000594243 BMP6P22004 513 aa16.15■□□□□ 0.18
UPF1-202ENST00000594243 HOXA9P31269 272 aa16.15■□□□□ 0.18
UPF1-202ENST00000594243 DLG4P78352 724 aa16.15■□□□□ 0.18
UPF1-202ENST00000594243 GPR17Q13304 367 aa16.15■□□□□ 0.18
UPF1-202ENST00000594243 BIRC3Q13489 604 aa16.15■□□□□ 0.18
UPF1-202ENST00000594243 WSCD1Q658N2 575 aa16.15■□□□□ 0.18
UPF1-202ENST00000594243 SCARA3Q6AZY7 606 aa16.15■□□□□ 0.18
UPF1-202ENST00000594243 FOXR2Q6PJQ5 311 aa16.15■□□□□ 0.18
UPF1-202ENST00000594243 SPATA18Q8TC71 538 aa16.15■□□□□ 0.18
UPF1-202ENST00000594243 SYAP1Q96A49 352 aaPredicted RBP16.15■□□□□ 0.18
UPF1-202ENST00000594243 NUP62CLQ9H1M0 184 aa16.15■□□□□ 0.18
UPF1-202ENST00000594243 CYP4F11Q9HBI6 524 aa16.15■□□□□ 0.18
UPF1-202ENST00000594243 AFF4Q9UHB7 1163 aaKnown RBP16.15■□□□□ 0.18
UPF1-202ENST00000594243 PRRG1O14668 218 aa16.14■□□□□ 0.17
UPF1-202ENST00000594243 SLC16A3O15427 465 aaKnown RBP16.14■□□□□ 0.17
UPF1-202ENST00000594243 STAU1O95793 577 aaKnown RBP16.14■□□□□ 0.17
UPF1-202ENST00000594243 FAM163BP0C2L3 166 aa16.14■□□□□ 0.17
UPF1-202ENST00000594243 LHX1P48742 406 aa16.14■□□□□ 0.17
UPF1-202ENST00000594243 PMS1P54277 932 aaKnown RBP16.14■□□□□ 0.17
UPF1-202ENST00000594243 MCCD1P59942 119 aaPredicted RBP16.14■□□□□ 0.17
UPF1-202ENST00000594243 SMARCB1Q12824 385 aa16.14■□□□□ 0.17
UPF1-202ENST00000594243 TDRD10Q5VZ19 366 aaKnown RBP16.14■□□□□ 0.17
UPF1-202ENST00000594243 KLHL10Q6JEL2 608 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms