RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 NPAS4Q8IUM7 802 aa26.86■■□□□ 1.89
SHMT1-207ENST00000580002 RBBP8NLQ8NC74 664 aaPredicted RBP26.86■■□□□ 1.89
SHMT1-207ENST00000580002 SYT11Q9BT88 431 aa26.86■■□□□ 1.89
SHMT1-207ENST00000580002 EPN1Q9Y6I3 576 aaPredicted RBP26.86■■□□□ 1.89
SHMT1-207ENST00000580002 TBKBP1A7MCY6 615 aa26.86■■□□□ 1.89
SHMT1-207ENST00000580002 CHRNB2P17787 502 aa26.86■■□□□ 1.89
SHMT1-207ENST00000580002 WDR5P61964 334 aaKnown RBP26.86■■□□□ 1.89
SHMT1-207ENST00000580002 GFPT1Q06210 699 aaPredicted RBP26.86■■□□□ 1.89
SHMT1-207ENST00000580002 DSC1Q08554 894 aa26.86■■□□□ 1.89
SHMT1-207ENST00000580002 ZNF365Q70YC5 407 aa26.86■■□□□ 1.89
SHMT1-207ENST00000580002 PALB2Q86YC2 1186 aa26.86■■□□□ 1.89
SHMT1-207ENST00000580002 COLGALT2Q8IYK4 626 aa26.86■■□□□ 1.89
SHMT1-207ENST00000580002 RPUSD2Q8IZ73 545 aaKnown RBP26.86■■□□□ 1.89
SHMT1-207ENST00000580002 LNX1Q8TBB1 728 aaPredicted RBP26.86■■□□□ 1.89
SHMT1-207ENST00000580002 CCDC42Q96M95 316 aa26.86■■□□□ 1.89
SHMT1-207ENST00000580002 TRMT1Q9NXH9 659 aaKnown RBP26.86■■□□□ 1.89
SHMT1-207ENST00000580002 ADAMTS1Q9UHI8 967 aa26.86■■□□□ 1.89
SHMT1-207ENST00000580002 CNTN6Q9UQ52 1028 aa26.86■■□□□ 1.89
SHMT1-207ENST00000580002 TDRD15B5MCY1 1934 aaKnown RBP26.86■■□□□ 1.89
SHMT1-207ENST00000580002 ABHD14A-ACY1A0A1B0GW23 586 aa26.85■■□□□ 1.89
SHMT1-207ENST00000580002 NDUFA10O95299 355 aa26.85■■□□□ 1.89
SHMT1-207ENST00000580002 CFHP08603 1231 aa26.85■■□□□ 1.89
SHMT1-207ENST00000580002 BRCC3P46736 316 aa26.85■■□□□ 1.89
SHMT1-207ENST00000580002 MAPK8IP2Q13387 824 aaPredicted RBP26.85■■□□□ 1.89
SHMT1-207ENST00000580002 ABI1Q8IZP0 508 aa26.85■■□□□ 1.89
SHMT1-207ENST00000580002 URGCPQ8TCY9 931 aa26.85■■□□□ 1.89
SHMT1-207ENST00000580002 NRDE2Q9H7Z3 1164 aa26.85■■□□□ 1.89
SHMT1-207ENST00000580002 NOCTQ9UK39 431 aaKnown RBP26.85■■□□□ 1.89
SHMT1-207ENST00000580002 LAMA2P24043 3122 aaKnown RBP26.85■■□□□ 1.89
SHMT1-207ENST00000580002 A0A087X0T9 212 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 DDX3XO00571 662 aaKnown RBP eCLIP26.84■■□□□ 1.892e-14■■■■□ 24.5
SHMT1-207ENST00000580002 FAM228BP0C875 321 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 CYP11B1P15538 503 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 KIF11P52732 1056 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 RNASELQ05823 741 aaKnown RBP26.84■■□□□ 1.89
SHMT1-207ENST00000580002 ZSCAN30Q86W11 494 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 EPS8L1Q8TE68 723 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 LPIN3Q9BQK8 851 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 ZSWIM1Q9BR11 485 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP26.84■■□□□ 1.89
SHMT1-207ENST00000580002 ELOVL4Q9GZR5 314 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 L1RE1Q9UN81 338 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 TIMM13Q9Y5L4 95 aaPredicted RBP26.84■■□□□ 1.89
SHMT1-207ENST00000580002 B3GAT3O94766 335 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 PBX3P40426 434 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 ZNF132P52740 706 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 TIGD5Q53EQ6 642 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 GLYCTKQ8IVS8 523 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 DDX1Q92499 740 aaKnown RBP26.84■■□□□ 1.89
SHMT1-207ENST00000580002 TOP1MTQ969P6 601 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 FAM81BQ96LP2 452 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 ZNF560Q96MR9 790 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 GDAP2Q9NXN4 497 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 ADGRG1Q9Y653 693 aa26.84■■□□□ 1.89
SHMT1-207ENST00000580002 KIF4AO95239 1232 aa26.83■■□□□ 1.89
SHMT1-207ENST00000580002 MMEP08473 750 aa26.83■■□□□ 1.89
SHMT1-207ENST00000580002 RPL9P32969 192 aaKnown RBP26.83■■□□□ 1.89
SHMT1-207ENST00000580002 FPGSQ05932 587 aa26.83■■□□□ 1.89
SHMT1-207ENST00000580002 KBTBD7Q8WVZ9 684 aa26.83■■□□□ 1.89
SHMT1-207ENST00000580002 DPF3Q92784 378 aa26.83■■□□□ 1.89
SHMT1-207ENST00000580002 JAKMIP2Q96AA8 810 aa26.83■■□□□ 1.89
SHMT1-207ENST00000580002 PCDHB18PQ96TA0 734 aa26.83■■□□□ 1.89
SHMT1-207ENST00000580002 DEF6Q9H4E7 631 aa26.83■■□□□ 1.89
SHMT1-207ENST00000580002 CXXC1Q9P0U4 656 aaPredicted RBP26.83■■□□□ 1.89
SHMT1-207ENST00000580002 SSU72P8A0A1W2PR75 194 aa26.82■■□□□ 1.88
SHMT1-207ENST00000580002 NRDCO43847 1150 aa26.82■■□□□ 1.88
SHMT1-207ENST00000580002 CILPO75339 1184 aa26.82■■□□□ 1.88
SHMT1-207ENST00000580002 DGKIO75912 1065 aa26.82■■□□□ 1.88
SHMT1-207ENST00000580002 ABL1P00519 1130 aa26.82■■□□□ 1.88
SHMT1-207ENST00000580002 PNPLA4P41247 253 aa26.82■■□□□ 1.88
SHMT1-207ENST00000580002 OR1G1P47890 313 aa26.82■■□□□ 1.88
SHMT1-207ENST00000580002 NDST1P52848 882 aa26.82■■□□□ 1.88
SHMT1-207ENST00000580002 RAD23BP54727 409 aa26.82■■□□□ 1.88
SHMT1-207ENST00000580002 SV2CQ496J9 727 aa26.82■■□□□ 1.88
SHMT1-207ENST00000580002 OSTM1Q86WC4 334 aa26.82■■□□□ 1.88
SHMT1-207ENST00000580002 TFAP2BQ92481 460 aa26.82■■□□□ 1.88
SHMT1-207ENST00000580002 SENP8Q96LD8 212 aa26.82■■□□□ 1.88
SHMT1-207ENST00000580002 AGPAT1Q99943 283 aa26.82■■□□□ 1.88
SHMT1-207ENST00000580002 BUD13Q9BRD0 619 aaKnown RBP eCLIP26.82■■□□□ 1.889e-6■□□□□ 9.3
SHMT1-207ENST00000580002 CYP3A43Q9HB55 503 aa26.82■■□□□ 1.88
SHMT1-207ENST00000580002 PRG3Q9Y2Y8 225 aaPredicted RBP26.82■■□□□ 1.88
SHMT1-207ENST00000580002 CYB561D2O14569 222 aa26.81■■□□□ 1.88
SHMT1-207ENST00000580002 AKR1B10O60218 316 aa26.81■■□□□ 1.88
SHMT1-207ENST00000580002 LMO2P25791 158 aa26.81■■□□□ 1.88
SHMT1-207ENST00000580002 CDR1P51861 262 aa26.81■■□□□ 1.88
SHMT1-207ENST00000580002 TMEM240Q5SV17 173 aa26.81■■□□□ 1.88
SHMT1-207ENST00000580002 LIMS2Q7Z4I7 341 aa26.81■■□□□ 1.88
SHMT1-207ENST00000580002 KANSL3Q9P2N6 904 aa26.81■■□□□ 1.88
SHMT1-207ENST00000580002 LTBP2Q14767 1821 aa26.81■■□□□ 1.88
SHMT1-207ENST00000580002 COL4A6Q14031 1691 aa26.81■■□□□ 1.88
SHMT1-207ENST00000580002 NT5C1B-RDH14C9J2C7 533 aa26.81■■□□□ 1.88
SHMT1-207ENST00000580002 FGBP02675 491 aa26.81■■□□□ 1.88
SHMT1-207ENST00000580002 P4HA1P13674 534 aa26.81■■□□□ 1.88
SHMT1-207ENST00000580002 PPIGQ13427 754 aaKnown RBP eCLIP26.81■■□□□ 1.882e-6■□□□□ 10.7
SHMT1-207ENST00000580002 WSCD1Q658N2 575 aa26.81■■□□□ 1.88
SHMT1-207ENST00000580002 CCDC170Q8IYT3 715 aa26.81■■□□□ 1.88
SHMT1-207ENST00000580002 PDCL2Q8N4E4 241 aa26.81■■□□□ 1.88
SHMT1-207ENST00000580002 SLC4A11Q8NBS3 891 aa26.81■■□□□ 1.88
SHMT1-207ENST00000580002 SLC30A5Q8TAD4 765 aa26.81■■□□□ 1.88
SHMT1-207ENST00000580002 TAS2R14Q9NYV8 317 aa26.81■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms