RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 CETN1Q12798 172 aa10.28□□□□□ -0.76
CCDC40-214ENST00000575431 SMARCB1Q12824 385 aa10.28□□□□□ -0.76
CCDC40-214ENST00000575431 NCOA4Q13772 614 aa10.28□□□□□ -0.76
CCDC40-214ENST00000575431 STX1AQ16623 288 aa10.28□□□□□ -0.76
CCDC40-214ENST00000575431 CTXN3Q4LDR2 81 aa10.28□□□□□ -0.76
CCDC40-214ENST00000575431 ZNF667Q5HYK9 610 aa10.28□□□□□ -0.76
CCDC40-214ENST00000575431 OVOS1Q6IE37 1185 aa10.28□□□□□ -0.76
CCDC40-214ENST00000575431 CAVIN1Q6NZI2 390 aaKnown RBP10.28□□□□□ -0.76
CCDC40-214ENST00000575431 PRSS55Q6UWB4 352 aaPredicted RBP10.28□□□□□ -0.76
CCDC40-214ENST00000575431 C15orf39Q6ZRI6 1047 aa10.28□□□□□ -0.76
CCDC40-214ENST00000575431 TOP6BLQ8N6T0 577 aa10.28□□□□□ -0.76
CCDC40-214ENST00000575431 ZNF461Q8TAF7 563 aa10.28□□□□□ -0.76
CCDC40-214ENST00000575431 ATXN2LQ8WWM7 1075 aaKnown RBP10.28□□□□□ -0.76
CCDC40-214ENST00000575431 B3GALT6Q96L58 329 aa10.28□□□□□ -0.76
CCDC40-214ENST00000575431 CLSTN3Q9BQT9 956 aa10.28□□□□□ -0.76
CCDC40-214ENST00000575431 SRRTQ9BXP5 876 aaKnown RBP10.28□□□□□ -0.76
CCDC40-214ENST00000575431 IMPG2Q9BZV3 1241 aa10.28□□□□□ -0.76
CCDC40-214ENST00000575431 NAT10Q9H0A0 1025 aaKnown RBP10.28□□□□□ -0.76
CCDC40-214ENST00000575431 TMEM63CQ9P1W3 806 aa10.28□□□□□ -0.76
CCDC40-214ENST00000575431 THEGQ9P2T0 379 aa10.28□□□□□ -0.76
CCDC40-214ENST00000575431 FAM50BQ9Y247 325 aa10.28□□□□□ -0.76
CCDC40-214ENST00000575431 PCDHGC5Q9Y5F6 944 aa10.28□□□□□ -0.76
CCDC40-214ENST00000575431 SNX9Q9Y5X1 595 aa10.28□□□□□ -0.76
CCDC40-214ENST00000575431 VWA8A3KMH1 1905 aa10.27□□□□□ -0.76
CCDC40-214ENST00000575431 PMM2O15305 246 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 P4HA2O15460 535 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 TBC1D4O60343 1298 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 IGFBP6P24592 240 aaPredicted RBP10.27□□□□□ -0.77
CCDC40-214ENST00000575431 OR1D2P34982 312 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 GCLMP48507 274 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 TNNC1P63316 161 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 MYL7Q01449 175 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 PPP3CAQ08209 521 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 UVSSAQ2YD98 709 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 WDR72Q3MJ13 1102 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 DCAF17Q5H9S7 520 aaPredicted RBP10.27□□□□□ -0.77
CCDC40-214ENST00000575431 C1orf220Q5T0J3 134 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 TCERG1LQ5VWI1 586 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 TDRD10Q5VZ19 366 aaKnown RBP10.27□□□□□ -0.77
CCDC40-214ENST00000575431 TPGS2Q68CL5 300 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 LILRA6Q6PI73 481 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 CYP26C1Q6V0L0 522 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 EP400NLQ6ZTU2 488 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 ENOX1Q8TC92 643 aaKnown RBP10.27□□□□□ -0.77
CCDC40-214ENST00000575431 SLC35C1Q96A29 364 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 EEF2KMTQ96G04 330 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 DNAI2Q9GZS0 605 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 THAP9Q9H5L6 903 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 FAM124BQ9H5Z6 455 aaPredicted RBP10.27□□□□□ -0.77
CCDC40-214ENST00000575431 MAGEC2Q9UBF1 373 aaPredicted RBP10.27□□□□□ -0.77
CCDC40-214ENST00000575431 FBXL5Q9UKA1 691 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 CDY1Q9Y6F8 540 aa10.27□□□□□ -0.77
CCDC40-214ENST00000575431 SCN1AP35498 2009 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 TACC1O75410 805 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 ABLIM3O94929 683 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 ASS1P00966 412 aaKnown RBP10.26□□□□□ -0.77
CCDC40-214ENST00000575431 TRIM49P0CI25 452 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 TRIM49CP0CI26 452 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 ATF2P15336 505 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 TRIM21P19474 475 aaKnown RBP10.26□□□□□ -0.77
CCDC40-214ENST00000575431 PCSK1P29120 753 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 ELF1P32519 619 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 GTF2F1P35269 517 aaKnown RBP eCLIP10.26□□□□□ -0.77
CCDC40-214ENST00000575431 LTBRP36941 435 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 PIK3CAP42336 1068 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 MXI1P50539 228 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 MYL6P60660 151 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 ITIH3Q06033 890 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 GPR17Q13304 367 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 ZNF699Q32M78 642 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 LEXMQ3ZCV2 418 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 LIN9Q5TKA1 542 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 CES5AQ6NT32 575 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 ANKRD54Q6NXT1 300 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 CCDC149Q6ZUS6 474 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 LIMS2Q7Z4I7 341 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 PALB2Q86YC2 1186 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 DCP1BQ8IZD4 617 aaKnown RBP10.26□□□□□ -0.77
CCDC40-214ENST00000575431 PDCL2Q8N4E4 241 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 TTC39CQ8N584 583 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 FBXL13Q8NEE6 735 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 CMASQ8NFW8 434 aaPredicted RBP10.26□□□□□ -0.77
CCDC40-214ENST00000575431 C2orf15Q8WU43 125 aaKnown RBP10.26□□□□□ -0.77
CCDC40-214ENST00000575431 MSLNLQ96KJ4 702 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 MMS19Q96T76 1030 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 ACBD6Q9BR61 282 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 RHOBTB2Q9BYZ6 727 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 XYLT2Q9H1B5 865 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 SFXN1Q9H9B4 322 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 ZDHHC7Q9NXF8 308 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 HSFX1Q9UBD0 423 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 AFF4Q9UHB7 1163 aaKnown RBP10.26□□□□□ -0.77
CCDC40-214ENST00000575431 CD207Q9UJ71 328 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 COQ4Q9Y3A0 265 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.26□□□□□ -0.77
CCDC40-214ENST00000575431 LAMA3Q16787 3333 aa10.26□□□□□ -0.77
CCDC40-214ENST00000575431 SPDYE4A6NLX3 237 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 GABRDO14764 452 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 LINC01565O15544 149 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 TGM5O43548 720 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms