RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 CASP1P29466 404 aa20.19■□□□□ 0.82
CLN3-227ENST00000567495 RBP5P82980 135 aa20.19■□□□□ 0.82
CLN3-227ENST00000567495 PLD1Q13393 1074 aa20.19■□□□□ 0.82
CLN3-227ENST00000567495 KNOP1Q1ED39 458 aaKnown RBP20.19■□□□□ 0.82
CLN3-227ENST00000567495 IQCEQ6IPM2 695 aa20.19■□□□□ 0.82
CLN3-227ENST00000567495 THEM5Q8N1Q8 247 aa20.19■□□□□ 0.82
CLN3-227ENST00000567495 FBXL6Q8N531 539 aa20.19■□□□□ 0.82
CLN3-227ENST00000567495 LEMD2Q8NC56 503 aa20.19■□□□□ 0.82
CLN3-227ENST00000567495 ZSWIM2Q8NEG5 633 aa20.19■□□□□ 0.82
CLN3-227ENST00000567495 CCDC47Q96A33 483 aaKnown RBP20.19■□□□□ 0.82
CLN3-227ENST00000567495 PDE11AQ9HCR9 933 aa20.19■□□□□ 0.82
CLN3-227ENST00000567495 SLC39A2Q9NP94 309 aa20.19■□□□□ 0.82
CLN3-227ENST00000567495 DNMT3BQ9UBC3 853 aaKnown RBP20.19■□□□□ 0.82
CLN3-227ENST00000567495 HSFX1Q9UBD0 423 aa20.19■□□□□ 0.82
CLN3-227ENST00000567495 MRPS23Q9Y3D9 190 aaKnown RBP20.19■□□□□ 0.82
CLN3-227ENST00000567495 MTCL1Q9Y4B5 1905 aaKnown RBP20.18■□□□□ 0.82
CLN3-227ENST00000567495 ANHXE9PGG2 379 aa20.18■□□□□ 0.82
CLN3-227ENST00000567495 TULP1O00294 542 aaPredicted RBP20.18■□□□□ 0.82
CLN3-227ENST00000567495 ZNF197O14709 1029 aa20.18■□□□□ 0.82
CLN3-227ENST00000567495 PRPF40AO75400 957 aaKnown RBP20.18■□□□□ 0.82
CLN3-227ENST00000567495 SEC24AO95486 1093 aa20.18■□□□□ 0.82
CLN3-227ENST00000567495 RHOP08100 348 aa20.18■□□□□ 0.82
CLN3-227ENST00000567495 TMEM191BP0C7N4 346 aa20.18■□□□□ 0.82
CLN3-227ENST00000567495 NDUFA8P51970 172 aa20.18■□□□□ 0.82
CLN3-227ENST00000567495 SMARCB1Q12824 385 aa20.18■□□□□ 0.82
CLN3-227ENST00000567495 DUOXA2Q1HG44 320 aa20.18■□□□□ 0.82
CLN3-227ENST00000567495 RNF19BQ6ZMZ0 732 aa20.18■□□□□ 0.82
CLN3-227ENST00000567495 C12orf56Q8IXR9 622 aa20.18■□□□□ 0.82
CLN3-227ENST00000567495 GRAMD1CQ8IYS0 662 aa20.18■□□□□ 0.82
CLN3-227ENST00000567495 CSGALNACT2Q8N6G5 542 aa20.18■□□□□ 0.82
CLN3-227ENST00000567495 C1orf127Q8N9H9 656 aa20.18■□□□□ 0.82
CLN3-227ENST00000567495 XXYLT1Q8NBI6 393 aa20.18■□□□□ 0.82
CLN3-227ENST00000567495 FGF13Q92913 245 aa20.18■□□□□ 0.82
CLN3-227ENST00000567495 ANKRD36BP1Q96IX9 119 aa20.18■□□□□ 0.82
CLN3-227ENST00000567495 GDE1Q9NZC3 331 aa20.18■□□□□ 0.82
CLN3-227ENST00000567495 DUSP12Q9UNI6 340 aa20.18■□□□□ 0.82
CLN3-227ENST00000567495 AGAP1Q9UPQ3 857 aa20.18■□□□□ 0.82
CLN3-227ENST00000567495 TRIOO75962 3097 aa20.17■□□□□ 0.82
CLN3-227ENST00000567495 KLRC4O43908 158 aa20.17■□□□□ 0.82
CLN3-227ENST00000567495 MICAL2O94851 1124 aa20.17■□□□□ 0.82
CLN3-227ENST00000567495 TNNC2P02585 160 aa20.17■□□□□ 0.82
CLN3-227ENST00000567495 ITGB3P05106 788 aa20.17■□□□□ 0.82
CLN3-227ENST00000567495 POLR2BP30876 1174 aaKnown RBP20.17■□□□□ 0.82
CLN3-227ENST00000567495 WNT7BP56706 349 aa20.17■□□□□ 0.82
CLN3-227ENST00000567495 NTHL1P78549 312 aa20.17■□□□□ 0.82
CLN3-227ENST00000567495 SNRNP35Q16560 246 aaKnown RBP20.17■□□□□ 0.82
CLN3-227ENST00000567495 MTSS1LQ765P7 747 aa20.17■□□□□ 0.82
CLN3-227ENST00000567495 CBWD2Q8IUF1 395 aa20.17■□□□□ 0.82
CLN3-227ENST00000567495 NELFCDQ8IXH7 590 aa20.17■□□□□ 0.82
CLN3-227ENST00000567495 FSIP1Q8NA03 581 aa20.17■□□□□ 0.82
CLN3-227ENST00000567495 SPATA18Q8TC71 538 aa20.17■□□□□ 0.82
CLN3-227ENST00000567495 BORCS6Q96GS4 357 aa20.17■□□□□ 0.82
CLN3-227ENST00000567495 CHAMP1Q96JM3 812 aa20.17■□□□□ 0.82
CLN3-227ENST00000567495 ZNF512Q96ME7 567 aaPredicted RBP20.17■□□□□ 0.82
CLN3-227ENST00000567495 INTS13Q9NVM9 706 aa20.17■□□□□ 0.82
CLN3-227ENST00000567495 HCFC1R1Q9NWW0 138 aa20.17■□□□□ 0.82
CLN3-227ENST00000567495 PDCD11Q14690 1871 aaKnown RBP20.16■□□□□ 0.82
CLN3-227ENST00000567495 DENND4AQ7Z401 1863 aa20.16■□□□□ 0.82
CLN3-227ENST00000567495 KIF20AO95235 890 aa20.16■□□□□ 0.82
CLN3-227ENST00000567495 MYO1EQ12965 1108 aa20.16■□□□□ 0.82
CLN3-227ENST00000567495 HTR4Q13639 388 aa20.16■□□□□ 0.82
CLN3-227ENST00000567495 CYP4A22Q5TCH4 519 aa20.16■□□□□ 0.82
CLN3-227ENST00000567495 WSCD1Q658N2 575 aa20.16■□□□□ 0.82
CLN3-227ENST00000567495 WDR49Q8IV35 697 aa20.16■□□□□ 0.82
CLN3-227ENST00000567495 SLC44A3Q8N4M1 653 aa20.16■□□□□ 0.82
CLN3-227ENST00000567495 ITFG1Q8TB96 612 aa20.16■□□□□ 0.82
CLN3-227ENST00000567495 C2orf15Q8WU43 125 aaKnown RBP20.16■□□□□ 0.82
CLN3-227ENST00000567495 TMEM174Q8WUU8 243 aa20.16■□□□□ 0.82
CLN3-227ENST00000567495 GDAP2Q9NXN4 497 aa20.16■□□□□ 0.82
CLN3-227ENST00000567495 ZDBF2Q9HCK1 2354 aa20.15■□□□□ 0.82
CLN3-227ENST00000567495 HUS1O60921 280 aa20.15■□□□□ 0.82
CLN3-227ENST00000567495 ALDH1A3P47895 512 aa20.15■□□□□ 0.82
CLN3-227ENST00000567495 CYP2J2P51589 502 aa20.15■□□□□ 0.82
CLN3-227ENST00000567495 EPHB3P54753 998 aa20.15■□□□□ 0.82
CLN3-227ENST00000567495 TWF1Q12792 350 aa20.15■□□□□ 0.82
CLN3-227ENST00000567495 STK4Q13043 487 aa20.15■□□□□ 0.82
CLN3-227ENST00000567495 KMT5BQ4FZB7 885 aa20.15■□□□□ 0.82
CLN3-227ENST00000567495 CENPPQ6IPU0 288 aa20.15■□□□□ 0.82
CLN3-227ENST00000567495 PDZD4Q76G19 769 aaPredicted RBP20.15■□□□□ 0.82
CLN3-227ENST00000567495 NPAS3Q8IXF0 933 aa20.15■□□□□ 0.82
CLN3-227ENST00000567495 TMEM86AQ8N2M4 240 aa20.15■□□□□ 0.82
CLN3-227ENST00000567495 CXorf38Q8TB03 319 aa20.15■□□□□ 0.82
CLN3-227ENST00000567495 FNBP1Q96RU3 617 aa20.15■□□□□ 0.82
CLN3-227ENST00000567495 PRRX2Q99811 253 aa20.15■□□□□ 0.82
CLN3-227ENST00000567495 CORO1BQ9BR76 489 aa20.15■□□□□ 0.82
CLN3-227ENST00000567495 MTMR12Q9C0I1 747 aa20.15■□□□□ 0.82
CLN3-227ENST00000567495 ZCWPW1Q9H0M4 648 aa20.15■□□□□ 0.82
CLN3-227ENST00000567495 YIPF1Q9Y548 306 aa20.15■□□□□ 0.82
CLN3-227ENST00000567495 ASB3Q9Y575 518 aa20.15■□□□□ 0.82
CLN3-227ENST00000567495 GOLGA6L4A6NEF3 574 aa20.14■□□□□ 0.81
CLN3-227ENST00000567495 CLIC2O15247 247 aa20.14■□□□□ 0.81
CLN3-227ENST00000567495 KRT19P08727 400 aa20.14■□□□□ 0.81
CLN3-227ENST00000567495 OR4Q2P0C623 313 aa20.14■□□□□ 0.81
CLN3-227ENST00000567495 SRFP11831 508 aa20.14■□□□□ 0.81
CLN3-227ENST00000567495 TUFMP49411 452 aaKnown RBP20.14■□□□□ 0.81
CLN3-227ENST00000567495 DUSP4Q13115 394 aa20.14■□□□□ 0.81
CLN3-227ENST00000567495 PSMD6Q15008 389 aa20.14■□□□□ 0.81
CLN3-227ENST00000567495 KRBA2Q6ZNG9 492 aa20.14■□□□□ 0.81
CLN3-227ENST00000567495 DCP1BQ8IZD4 617 aaKnown RBP20.14■□□□□ 0.81
CLN3-227ENST00000567495 OR10T2Q8NGX3 314 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms