RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ALDH1A3P47895 512 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 DUSP4Q13115 394 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 TOB2Q14106 344 aaPredicted RBP8.01□□□□□ -1.13
VPS4A-203ENST00000564399 UAP1L1Q3KQV9 507 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 ZNF568Q3ZCX4 644 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 EARS2Q5JPH6 523 aaKnown RBP8.01□□□□□ -1.13
VPS4A-203ENST00000564399 KIAA1211LQ6NV74 962 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 PADI6Q6TGC4 694 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 CAMKK1Q8N5S9 505 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 DDX12PQ92771 950 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 C18orf25Q96B23 403 aaPredicted RBP8.01□□□□□ -1.13
VPS4A-203ENST00000564399 ZNF274Q96GC6 653 aaPredicted RBP8.01□□□□□ -1.13
VPS4A-203ENST00000564399 SUSD3Q96L08 255 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 TBC1D32Q96NH3 1257 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 LRRC3BQ96PB8 259 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 HHIPQ96QV1 700 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 NACC1Q96RE7 527 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 TCHPQ9BT92 498 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 TMEM121BQ9BXQ6 578 aaPredicted RBP8.01□□□□□ -1.13
VPS4A-203ENST00000564399 LRRC3Q9BY71 257 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 POLD4Q9HCU8 107 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 TMEM9BQ9NQ34 198 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 POLR3BQ9NW08 1133 aaPredicted RBP8.01□□□□□ -1.13
VPS4A-203ENST00000564399 OBP2AQ9NY56 170 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 DAXXQ9UER7 740 aaPredicted RBP8.01□□□□□ -1.13
VPS4A-203ENST00000564399 TPCN1Q9ULQ1 816 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 TNFSF13BQ9Y275 285 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 MYO18AQ92614 2054 aaKnown RBP8.01□□□□□ -1.13
VPS4A-203ENST00000564399 GOLGA4Q13439 2230 aaKnown RBP8.01□□□□□ -1.13
VPS4A-203ENST00000564399 DENND4CQ5VZ89 1909 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 LNP1A1A4G5 178 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 BCLAF3A2AJT9 711 aaKnown RBP8□□□□□ -1.13
VPS4A-203ENST00000564399 KHNYNO15037 678 aaKnown RBP8□□□□□ -1.13
VPS4A-203ENST00000564399 DCLK1O15075 740 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 NEMFO60524 1076 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 DTNBO60941 627 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 RNF40O75150 1001 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 PRAMEF12O95522 483 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 FGF19O95750 216 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 OR4Q2P0C623 313 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 SPATA31C1P0DKV0 1188 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 HARSP12081 509 aaKnown RBP8□□□□□ -1.13
VPS4A-203ENST00000564399 CSRP1P21291 193 aaKnown RBP8□□□□□ -1.13
VPS4A-203ENST00000564399 GABRR2P28476 465 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 MCM2P49736 904 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 YWHAHQ04917 246 aaPredicted RBP8□□□□□ -1.13
VPS4A-203ENST00000564399 NR5A1Q13285 461 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 KARSQ15046 597 aaKnown RBP8□□□□□ -1.13
VPS4A-203ENST00000564399 FSTL4Q6MZW2 842 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 ALKAL1Q6UXT8 129 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 GAREM2Q75VX8 874 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 RUFY3Q7L099 469 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 DNAJB7Q7Z6W7 309 aaPredicted RBP8□□□□□ -1.13
VPS4A-203ENST00000564399 USP37Q86T82 979 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 CATSPER3Q86XQ3 398 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 TMC8Q8IU68 726 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 DEFB124Q8NES8 71 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 GATA6Q92908 595 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 KIF12Q96FN5 646 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 ZMAT2Q96NC0 199 aaKnown RBP8□□□□□ -1.13
VPS4A-203ENST00000564399 ACAP3Q96P50 834 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 DNAJC25Q9H1X3 360 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 CDT1Q9H211 546 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 BRMS1Q9HCU9 246 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 TUFT1Q9NNX1 390 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 GKN1Q9NS71 199 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 PCDHB8Q9UN66 801 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 WASF3Q9UPY6 502 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 INVSQ9Y283 1065 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 SLC27A5Q9Y2P5 690 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 ASB3Q9Y575 518 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 TIMM13Q9Y5L4 95 aaPredicted RBP8□□□□□ -1.13
VPS4A-203ENST00000564399 CYP46A1Q9Y6A2 500 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 ANK1P16157 1881 aa8□□□□□ -1.13
VPS4A-203ENST00000564399 ADAMTS20P59510 1910 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 LAMA1P25391 3075 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 MYH11P35749 1972 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 URB1O60287 2271 aaKnown RBP7.99□□□□□ -1.13
VPS4A-203ENST00000564399 CCDC169A6NNP5 214 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 TRDMT1O14717 391 aaKnown RBP7.99□□□□□ -1.13
VPS4A-203ENST00000564399 HYAL3O43820 417 aaPredicted RBP7.99□□□□□ -1.13
VPS4A-203ENST00000564399 MED24O75448 989 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 APC2O95996 2303 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 EGFP01133 1207 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 KCNE1P15382 129 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 KRT2P35908 639 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 DGKEP52429 567 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 CYP4F8P98187 520 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 AMPD2Q01433 879 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 PSMD2Q13200 908 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 GPR17Q13304 367 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 RUNX3Q13761 415 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 TAF12Q16514 161 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 XKR4Q5GH76 650 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 TMEM196Q5HYL7 178 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 CYP2U1Q7Z449 544 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 ITIH5Q86UX2 942 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 SKAP1Q86WV1 359 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 ATAD1Q8NBU5 361 aa7.99□□□□□ -1.13
VPS4A-203ENST00000564399 BEST2Q8NFU1 509 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms