RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 MICAL1Q8TDZ2 1067 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 ARNTL2Q8WYA1 636 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 JAKMIP2Q96AA8 810 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 IQCDQ96DY2 449 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 ERGIC2Q96RQ1 377 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 PAAF1Q9BRP4 392 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 NUP58Q9BVL2 599 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 INTS2Q9H0H0 1204 aaKnown RBP9.9□□□□□ -0.82
LDLR-210ENST00000559340 RBSNQ9H1K0 784 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 MRPL17Q9NRX2 175 aaKnown RBP9.9□□□□□ -0.82
LDLR-210ENST00000559340 MARCH5Q9NX47 278 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 LMCD1Q9NZU5 365 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 GCNT4Q9P109 453 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 HCSTQ9UBK5 93 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 NXF1Q9UBU9 619 aaKnown RBP9.9□□□□□ -0.82
LDLR-210ENST00000559340 MTUS1Q9ULD2 1270 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 A0A1W2PQC6 194 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 FSD2A1L4K1 749 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 RBAK-RBAKDNI3L0D1 243 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 B4GALT3O60512 393 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 TACC1O75410 805 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 CXCL14O95715 111 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 CYP11A1P05108 521 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 ITGB1P05556 798 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 LINC00271P0C7V0 271 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 CTSAP10619 480 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 FGFR3P22607 806 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 PON1P27169 355 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 PCSK1P29120 753 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 PBX3P40426 434 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 BRCC3P46736 316 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 GLUD2P49448 558 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 MFAP3P55082 362 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 YWHAHQ04917 246 aaPredicted RBP9.89□□□□□ -0.83
LDLR-210ENST00000559340 SMC1AQ14683 1233 aaKnown RBP9.89□□□□□ -0.83
LDLR-210ENST00000559340 NR1I3Q14994 352 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 ZNF280DQ6N043 979 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 SARM1Q6SZW1 724 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 CEP57Q86XR8 500 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 FMNL3Q8IVF7 1028 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 C3orf58Q8NDZ4 430 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 NEK11Q8NG66 645 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 MAFAQ8NHW3 353 aaPredicted RBP9.89□□□□□ -0.83
LDLR-210ENST00000559340 HASPINQ8TF76 798 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 POF1BQ8WVV4 589 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 RABGGTAQ92696 567 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 SEMA4DQ92854 862 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 CRACR2AQ9BSW2 395 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 EMILIN2Q9BXX0 1053 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 GPR62Q9BZJ7 368 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 TRIM5Q9C035 493 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 NIF3L1Q9GZT8 377 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 XYLT2Q9H1B5 865 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 SNX25Q9H3E2 840 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 PLCB1Q9NQ66 1216 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 ENTPD7Q9NQZ7 604 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 TLR9Q9NR96 1032 aa9.89□□□□□ -0.83
LDLR-210ENST00000559340 COL6A3P12111 3177 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 OR6C75A6NL08 312 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 PPEF2O14830 753 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 OAZ2O95190 189 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 TPM1P09493 284 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 WARSP23381 471 aaKnown RBP9.88□□□□□ -0.83
LDLR-210ENST00000559340 GNL1P36915 607 aaPredicted RBP9.88□□□□□ -0.83
LDLR-210ENST00000559340 TSPY1Q01534 308 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 DSG1Q02413 1049 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 GCNT1Q02742 428 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 SMARCB1Q12824 385 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 OVOS1Q6IE37 1185 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 TRIM65Q6PJ69 517 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 ELMSAN1Q6PJG2 1045 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 CD300LGQ6UXG3 332 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 APTXQ7Z2E3 356 aaKnown RBP9.88□□□□□ -0.83
LDLR-210ENST00000559340 PPFIBP1Q86W92 1011 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 UNC93AQ86WB7 457 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 GAS2L3Q86XJ1 694 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 RNF168Q8IYW5 571 aaPredicted RBP9.88□□□□□ -0.83
LDLR-210ENST00000559340 ADGRF2Q8IZF7 708 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 PPM1KQ8N3J5 372 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 OR6B3Q8NGW1 331 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 LMO3Q8TAP4 145 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 RIN2Q8WYP3 895 aaPredicted RBP9.88□□□□□ -0.83
LDLR-210ENST00000559340 PIK3R5Q8WYR1 880 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 PI4K2AQ9BTU6 479 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 LSM14BQ9BX40 385 aaKnown RBP9.88□□□□□ -0.83
LDLR-210ENST00000559340 BCO2Q9BYV7 579 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 EDEM3Q9BZQ6 932 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 CERS4Q9HA82 394 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 ALG13Q9NP73 1137 aaKnown RBP9.88□□□□□ -0.83
LDLR-210ENST00000559340 UBE2TQ9NPD8 197 aaPredicted RBP9.88□□□□□ -0.83
LDLR-210ENST00000559340 CHST7Q9NS84 486 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 IFNKQ9P0W0 207 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 FNIP2Q9P278 1114 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 CACNG4Q9UBN1 327 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 APEX2Q9UBZ4 518 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.88□□□□□ -0.831e-10■□□□□ 11.3
LDLR-210ENST00000559340 BACE2Q9Y5Z0 518 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 IRAK3Q9Y616 596 aa9.88□□□□□ -0.83
LDLR-210ENST00000559340 GOLGA6L3A6NEY3 463 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 I3L4J1 428 aa9.87□□□□□ -0.83
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