RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 ASIC3Q9UHC3 531 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 IP6K2Q9UHH9 426 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 CEP83Q9Y592 693 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 CNTNAP2Q9UHC6 1331 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 C5orf60A6NFR6 353 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 MEFVO15553 781 aaPredicted RBP7.72□□□□□ -1.17
VPS13C-206ENST00000558338 RIPK2O43353 540 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 SORBS3O60504 671 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 TOM1L1O75674 476 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 SLC25A27O95847 323 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 ATF2P15336 505 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 SLC26A2P50443 739 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 ZNF132P52740 706 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 SP2Q02086 613 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 MCL1Q07820 350 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 CAPSQ13938 189 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 TFDP1Q14186 410 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 TTC31Q49AM3 519 aaPredicted RBP7.72□□□□□ -1.17
VPS13C-206ENST00000558338 PPP1R15BQ5SWA1 713 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 PLEKHA7Q6IQ23 1121 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 MFSD5Q6N075 450 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 TMEM270Q6UE05 265 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 CCDC50Q8IVM0 306 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 OTUD6BQ8N6M0 293 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 CCDC89Q8N998 374 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 ATL2Q8NHH9 583 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 CPA5Q8WXQ8 436 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 FAXDC2Q96IV6 333 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 DCLK3Q9C098 648 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 ZNF518BQ9C0D4 1074 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 NSRP1Q9H0G5 558 aaKnown RBP7.72□□□□□ -1.17
VPS13C-206ENST00000558338 EPB41L4BQ9H329 900 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 CHORDC1Q9UHD1 332 aaPredicted RBP7.72□□□□□ -1.17
VPS13C-206ENST00000558338 PTPN22Q9Y2R2 807 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 SNCAIPQ9Y6H5 919 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 OTOFQ9HC10 1997 aa7.72□□□□□ -1.17
VPS13C-206ENST00000558338 GSTTP1A0A1W2PQM5 241 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 RASGRF2O14827 1237 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 OGTO15294 1046 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 CAND2O75155 1236 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 LGR5O75473 907 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 ASS1P00966 412 aaKnown RBP7.71□□□□□ -1.18
VPS13C-206ENST00000558338 SSTR3P32745 418 aaPredicted RBP7.71□□□□□ -1.18
VPS13C-206ENST00000558338 PTPN7P35236 360 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 COPS2P61201 443 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 IRX3P78415 501 aaPredicted RBP7.71□□□□□ -1.18
VPS13C-206ENST00000558338 VGLL4Q14135 290 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 SLC29A2Q14542 456 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 PLCB4Q15147 1175 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 CCNG2Q16589 344 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 MAPK6Q16659 721 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 SGSM1Q2NKQ1 1148 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 TMEM259Q4ZIN3 620 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 LRRC38Q5VT99 294 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 LMBRD2Q68DH5 695 aaPredicted RBP7.71□□□□□ -1.18
VPS13C-206ENST00000558338 ZNF365Q70YC5 407 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 ZDHHC14Q8IZN3 488 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 UBR7Q8N806 425 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 FEZF2Q8TBJ5 459 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 CYFIP2Q96F07 1278 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 CCDC114Q96M63 670 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 SERPINB12Q96P63 405 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 C11orf70Q9BRQ4 267 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 NIF3L1Q9GZT8 377 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 SPATC1LQ9H0A9 340 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 APOBEC3GQ9HC16 384 aaKnown RBP7.71□□□□□ -1.18
VPS13C-206ENST00000558338 PPANQ9NQ55 473 aaKnown RBP7.71□□□□□ -1.18
VPS13C-206ENST00000558338 UMODL1Q5DID0 1318 aa7.71□□□□□ -1.18
VPS13C-206ENST00000558338 TCRBV7S2A1N4TA0A589 114 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 NOP56O00567 594 aaKnown RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 TLR3O15455 904 aaKnown RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 USP2O75604 605 aaPredicted RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 TNNC2P02585 160 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 PRKCBP05771 671 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 RDXP35241 583 aaKnown RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 TCF7P36402 384 aaPredicted RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 MMP13P45452 471 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 IREB2P48200 963 aaKnown RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 CNTN2Q02246 1040 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 KLF1Q13351 362 aaPredicted RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 MAMLD1Q13495 774 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 TRPC3Q13507 836 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 DUOXA2Q1HG44 320 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 ERMARDQ5T6L9 678 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 SPOPLQ6IQ16 392 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 RHBDF2Q6PJF5 856 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 PLPPR4Q7Z2D5 763 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 NCAPG2Q86XI2 1143 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 RCOR2Q8IZ40 523 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 CACNA2D3Q8IZS8 1091 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 TMEM35BQ8NCS4 154 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 SGSM3Q96HU1 749 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 ANKRD36BP1Q96IX9 119 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 SCLT1Q96NL6 688 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 XPO6Q96QU8 1125 aaKnown RBP7.7□□□□□ -1.18
VPS13C-206ENST00000558338 PCYT2Q99447 389 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 SELENOSQ9BQE4 189 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 PLCD4Q9BRC7 762 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 OSBPL8Q9BZF1 889 aa7.7□□□□□ -1.18
VPS13C-206ENST00000558338 HAPLN2Q9GZV7 340 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms