RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 CCDC150Q8NCX0 1101 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 LRRC15Q8TF66 581 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 B3GALT6Q96L58 329 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 MFSD14AQ96MC6 490 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 CLSTN3Q9BQT9 956 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 BLZF1Q9H2G9 400 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 HSPBP1Q9NZL4 362 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 HSFX1Q9UBD0 423 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 AFF4Q9UHB7 1163 aaKnown RBP9.34□□□□□ -0.91
USP3-208ENST00000558285 SORCS3Q9UPU3 1222 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 MYH15Q9Y2K3 1946 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 CHD9Q3L8U1 2897 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 ACTN4O43707 911 aaKnown RBP9.34□□□□□ -0.92
USP3-208ENST00000558285 FAM189A1O60320 539 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 PHACTR2O75167 634 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 OAZ2O95190 189 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 RPN1P04843 607 aaKnown RBP9.34□□□□□ -0.92
USP3-208ENST00000558285 NFICP08651 508 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 P4HA1P13674 534 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 ATF2P15336 505 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 RPL17P18621 184 aaKnown RBP9.34□□□□□ -0.92
USP3-208ENST00000558285 TNNI1P19237 187 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 FSHRP23945 695 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 PCSK1P29120 753 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 BRCC3P46736 316 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 ALDH1A3P47895 512 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 TUFMP49411 452 aaKnown RBP9.34□□□□□ -0.92
USP3-208ENST00000558285 AARSP49588 968 aaKnown RBP eCLIP9.34□□□□□ -0.92
USP3-208ENST00000558285 EPHB3P54753 998 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 ARPP19P56211 112 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 LILRA4P59901 499 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 SOX4Q06945 474 aaPredicted RBP9.34□□□□□ -0.92
USP3-208ENST00000558285 TRPC3Q13507 836 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 CUL4BQ13620 913 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 KCNB1Q14721 858 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 MAPRE1Q15691 268 aaKnown RBP9.34□□□□□ -0.92
USP3-208ENST00000558285 SNRNP35Q16560 246 aaKnown RBP9.34□□□□□ -0.92
USP3-208ENST00000558285 NFE2Q16621 373 aaPredicted RBP9.34□□□□□ -0.92
USP3-208ENST00000558285 SLC39A4Q6P5W5 647 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 LILRA6Q6PI73 481 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 CLEC17AQ6ZS10 378 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 MTSS1LQ765P7 747 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 SUGP1Q8IWZ8 645 aaKnown RBP9.34□□□□□ -0.92
USP3-208ENST00000558285 TCEAL8Q8IYN2 117 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 SLC7A14Q8TBB6 771 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 SAAL1Q96ER3 474 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 ZNF512Q96ME7 567 aaPredicted RBP9.34□□□□□ -0.92
USP3-208ENST00000558285 GCNAQ96QF7 691 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 TSG101Q99816 390 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 CYP4F11Q9HBI6 524 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 AGPAT3Q9NRZ7 376 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 ZMYM5Q9UJ78 669 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 HPSEQ9Y251 543 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 ASB3Q9Y575 518 aa9.34□□□□□ -0.92
USP3-208ENST00000558285 MYO7AQ13402 2215 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 PRR33A8MZF0 331 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 KPNA7A9QM74 516 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 F8W810 466 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 GOLGA6L22H0YM25 854 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 PIRO00625 290 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 PDXKO00764 312 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 CYB561D2O14569 222 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 STX10O60499 249 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 GPR37L1O60883 481 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 ZNF202O95125 648 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 KRT13P13646 458 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 PTPN2P17706 415 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 RFX1P22670 979 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 LHX1P48742 406 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 CYP2J2P51589 502 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 NDUFA8P51970 172 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 ROR1Q01973 937 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 FAM160A1Q05DH4 1040 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 SPAG1Q07617 926 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 PTPN21Q16825 1174 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 EPM2AIP1Q7L775 607 aaPredicted RBP9.33□□□□□ -0.92
USP3-208ENST00000558285 DPH6Q7L8W6 267 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 NELFCDQ8IXH7 590 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 CSGALNACT2Q8N6G5 542 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 C12orf76Q8N812 135 aaPredicted RBP9.33□□□□□ -0.92
USP3-208ENST00000558285 SENP8Q96LD8 212 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 TIGD1Q96MW7 591 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 PRRX2Q99811 253 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 IMPG2Q9BZV3 1241 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 GPR88Q9GZN0 384 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 GZF1Q9H116 711 aaPredicted RBP9.33□□□□□ -0.92
USP3-208ENST00000558285 PCIF1Q9H4Z3 704 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 POMKQ9H5K3 350 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 SLC39A2Q9NP94 309 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 EHD2Q9NZN4 543 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 FBXL5Q9UKA1 691 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 BRWD1Q9NSI6 2320 aa9.33□□□□□ -0.92
USP3-208ENST00000558285 CUL9Q8IWT3 2517 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 CITO14578 2027 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 ANO9A1A5B4 782 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 I3L4J1 428 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 ABLIM3O94929 683 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 PAPLNO95428 1278 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 CYP11A1P05108 521 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 FAM163BP0C2L3 166 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms