RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 NT5C1BQ96P26 610 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 ZBP1Q9H171 429 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 SMYD3Q9H7B4 428 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 MRPL17Q9NRX2 175 aaKnown RBP15.06■□□□□ 0
VIPAS39-208ENST00000556412 GDAP2Q9NXN4 497 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 L1RE1Q9UN81 338 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.06■□□□□ 0
VIPAS39-208ENST00000556412 ARHGEF37A1IGU5 675 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 LRRC10BA6NIK2 292 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 SYN3O14994 580 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 PMM2O15305 246 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 LPXNO60711 386 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 STAU1O95793 577 aaKnown RBP15.06■□□□□ 0
VIPAS39-208ENST00000556412 SLC9A1P19634 815 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 FGFR3P22607 806 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 IRS1P35568 1242 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 APBA1Q02410 837 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 YWHAHQ04917 246 aaPredicted RBP15.06■□□□□ 0
VIPAS39-208ENST00000556412 PTPN21Q16825 1174 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 SOWAHAQ2M3V2 549 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 ADGRF2Q8IZF7 708 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 PDCL2Q8N4E4 241 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 TATDN2Q93075 761 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 NIF3L1Q9GZT8 377 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 DSEQ9UL01 958 aa15.06■□□□□ 0
VIPAS39-208ENST00000556412 CXCL14O95715 111 aa15.05■□□□□ -0
VIPAS39-208ENST00000556412 EFEMP2O95967 443 aa15.05■□□□□ -0
VIPAS39-208ENST00000556412 CTSAP10619 480 aa15.05■□□□□ -0
VIPAS39-208ENST00000556412 IGFBP4P22692 258 aa15.05■□□□□ -0
VIPAS39-208ENST00000556412 CDH8P55286 799 aa15.05■□□□□ -0
VIPAS39-208ENST00000556412 UBASH3AP57075 661 aa15.05■□□□□ -0
VIPAS39-208ENST00000556412 PTPROQ16827 1216 aa15.05■□□□□ -0
VIPAS39-208ENST00000556412 VARS2Q5ST30 1063 aaKnown RBP15.05■□□□□ -0
VIPAS39-208ENST00000556412 OVOS1Q6IE37 1185 aa15.05■□□□□ -0
VIPAS39-208ENST00000556412 TRIM65Q6PJ69 517 aa15.05■□□□□ -0
VIPAS39-208ENST00000556412 GLYCTKQ8IVS8 523 aa15.05■□□□□ -0
VIPAS39-208ENST00000556412 RNF168Q8IYW5 571 aaPredicted RBP15.05■□□□□ -0
VIPAS39-208ENST00000556412 PPM1KQ8N3J5 372 aa15.05■□□□□ -0
VIPAS39-208ENST00000556412 NAP1L5Q96NT1 182 aaPredicted RBP15.05■□□□□ -0
VIPAS39-208ENST00000556412 LSM14BQ9BX40 385 aaKnown RBP15.05■□□□□ -0
VIPAS39-208ENST00000556412 VRTNQ9H8Y1 702 aa15.05■□□□□ -0
VIPAS39-208ENST00000556412 CHST7Q9NS84 486 aa15.05■□□□□ -0
VIPAS39-208ENST00000556412 IFNKQ9P0W0 207 aa15.05■□□□□ -0
VIPAS39-208ENST00000556412 GTPBP10A4D1E9 387 aaKnown RBP15.04■□□□□ -0
VIPAS39-208ENST00000556412 WEE2P0C1S8 567 aa15.04■□□□□ -0
VIPAS39-208ENST00000556412 RPL17P18621 184 aaKnown RBP15.04■□□□□ -0
VIPAS39-208ENST00000556412 CD58P19256 250 aa15.04■□□□□ -0
VIPAS39-208ENST00000556412 PON1P27169 355 aa15.04■□□□□ -0
VIPAS39-208ENST00000556412 ASPAP45381 313 aa15.04■□□□□ -0
VIPAS39-208ENST00000556412 DSG1Q02413 1049 aa15.04■□□□□ -0
VIPAS39-208ENST00000556412 CAMK1Q14012 370 aa15.04■□□□□ -0
VIPAS39-208ENST00000556412 SMC1AQ14683 1233 aaKnown RBP15.04■□□□□ -0
VIPAS39-208ENST00000556412 SYCP1Q15431 976 aa15.04■□□□□ -0
VIPAS39-208ENST00000556412 PSMD5Q16401 504 aa15.04■□□□□ -0
VIPAS39-208ENST00000556412 CTXN3Q4LDR2 81 aa15.04■□□□□ -0
VIPAS39-208ENST00000556412 RRAGAQ7L523 313 aa15.04■□□□□ -0
VIPAS39-208ENST00000556412 TOP6BLQ8N6T0 577 aa15.04■□□□□ -0
VIPAS39-208ENST00000556412 OR6B3Q8NGW1 331 aa15.04■□□□□ -0
VIPAS39-208ENST00000556412 LMO3Q8TAP4 145 aa15.04■□□□□ -0
VIPAS39-208ENST00000556412 ARID3AQ99856 593 aa15.04■□□□□ -0
VIPAS39-208ENST00000556412 MRPL45Q9BRJ2 306 aaKnown RBP15.04■□□□□ -0
VIPAS39-208ENST00000556412 SNX25Q9H3E2 840 aa15.04■□□□□ -0
VIPAS39-208ENST00000556412 TRIOBPQ9H2D6 2365 aa15.04■□□□□ -0
VIPAS39-208ENST00000556412 CITO14578 2027 aa15.04■□□□□ -0
VIPAS39-208ENST00000556412 HIDE1A8MVS5 230 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 TEX33O43247 280 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 TYMPP19971 482 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 KLK7P49862 253 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 ARPP19P56211 112 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 PTPN14Q15678 1187 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 KIAA0319Q5VV43 1072 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 ZNF280DQ6N043 979 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 GJB7Q6PEY0 223 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 ANKS3Q6ZW76 656 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 ARHGEF19Q8IW93 802 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 DEFB123Q8N688 67 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 LMAN2LQ9H0V9 348 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 SDCBP2Q9H190 292 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 NGRNQ9NPE2 291 aaKnown RBP15.03■□□□□ -0
VIPAS39-208ENST00000556412 RTN4Q9NQC3 1192 aaKnown RBP15.03■□□□□ -0
VIPAS39-208ENST00000556412 FAM207AQ9NSI2 230 aaPredicted RBP15.03■□□□□ -0
VIPAS39-208ENST00000556412 CHD9Q3L8U1 2897 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 A0A1B0GTH6 734 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 H7C4K7 107 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 ACAT1P24752 427 aaKnown RBP15.03■□□□□ -0
VIPAS39-208ENST00000556412 FXR1P51114 621 aaKnown RBP eCLIP15.03■□□□□ -0
VIPAS39-208ENST00000556412 CDR1P51861 262 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 KCNMA1Q12791 1236 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 CUL2Q13617 745 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 RBM23Q86U06 439 aaKnown RBP15.03■□□□□ -0
VIPAS39-208ENST00000556412 THEM5Q8N1Q8 247 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 TMEM86AQ8N2M4 240 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 MICALL1Q8N3F8 863 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 LNX1Q8TBB1 728 aaPredicted RBP15.03■□□□□ -0
VIPAS39-208ENST00000556412 KBTBD7Q8WVZ9 684 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 PIK3R5Q8WYR1 880 aa15.03■□□□□ -0
VIPAS39-208ENST00000556412 MRPL38Q96DV4 380 aaKnown RBP15.03■□□□□ -0
VIPAS39-208ENST00000556412 GAS2L1Q99501 681 aaPredicted RBP15.03■□□□□ -0
VIPAS39-208ENST00000556412 UBE2TQ9NPD8 197 aaPredicted RBP15.03■□□□□ -0
VIPAS39-208ENST00000556412 DDX43Q9NXZ2 648 aaKnown RBP15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms