RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 DNA2P51530 1060 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 WDR72Q3MJ13 1102 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 NAA35Q5VZE5 725 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 MON1BQ7L1V2 547 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 USP38Q8NB14 1042 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 TMEM40Q8WWA1 233 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 CPA5Q8WXQ8 436 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 RUBCNQ92622 972 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 DPP3Q9NY33 737 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 EHD2Q9NZN4 543 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 NXF1Q9UBU9 619 aaKnown RBP15.68■□□□□ 0.1
VPS33B-205ENST00000556096 GTF2IRD1Q9UHL9 959 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 TTC7AQ9ULT0 858 aaPredicted RBP15.68■□□□□ 0.1
VPS33B-205ENST00000556096 CAPN15O75808 1086 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 LSM8O95777 96 aaKnown RBP15.68■□□□□ 0.1
VPS33B-205ENST00000556096 CD58P19256 250 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 CST5P28325 142 aaPredicted RBP15.68■□□□□ 0.1
VPS33B-205ENST00000556096 YARSP54577 528 aaKnown RBP15.68■□□□□ 0.1
VPS33B-205ENST00000556096 NBPF20Q3BBV1 942 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 GLE1Q53GS7 698 aaKnown RBP15.68■□□□□ 0.1
VPS33B-205ENST00000556096 CC2D1AQ6P1N0 951 aaPredicted RBP15.68■□□□□ 0.1
VPS33B-205ENST00000556096 CXCL17Q6UXB2 119 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 ALKAL1Q6UXT8 129 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 KLHDC9Q8NEP7 349 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 KIF12Q96FN5 646 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 SNX27Q96L92 541 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 TSPAN18Q96SJ8 248 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 TMEM106CQ9BVX2 250 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 EIF2AQ9BY44 585 aaKnown RBP15.68■□□□□ 0.1
VPS33B-205ENST00000556096 CELF4Q9BZC1 486 aaKnown RBP15.68■□□□□ 0.1
VPS33B-205ENST00000556096 ZNF518BQ9C0D4 1074 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 SNTG2Q9NY99 539 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 SMARCAL1Q9NZC9 954 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 TMEM59LQ9UK28 342 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 PCDHGC3Q9UN70 934 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 POLIQ9UNA4 740 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 AGAP1Q9UPQ3 857 aa15.68■□□□□ 0.1
VPS33B-205ENST00000556096 FAM170AA1A519 330 aa15.67■□□□□ 0.1
VPS33B-205ENST00000556096 ATMINO43313 823 aaPredicted RBP15.67■□□□□ 0.1
VPS33B-205ENST00000556096 ATP8B1O43520 1251 aa15.67■□□□□ 0.1
VPS33B-205ENST00000556096 RRP9O43818 475 aaKnown RBP15.67■□□□□ 0.1
VPS33B-205ENST00000556096 CEP104O60308 925 aa15.67■□□□□ 0.1
VPS33B-205ENST00000556096 ERLIN1O75477 346 aa15.67■□□□□ 0.1
VPS33B-205ENST00000556096 ZRANB2O95218 330 aaKnown RBP eCLIP15.67■□□□□ 0.1
VPS33B-205ENST00000556096 RPLP2P05387 115 aaKnown RBP15.67■□□□□ 0.1
VPS33B-205ENST00000556096 CFHP08603 1231 aa15.67■□□□□ 0.1
VPS33B-205ENST00000556096 PAEPP09466 180 aa15.67■□□□□ 0.1
VPS33B-205ENST00000556096 EN2P19622 333 aaPredicted RBP15.67■□□□□ 0.1
VPS33B-205ENST00000556096 POLR2BP30876 1174 aaKnown RBP15.67■□□□□ 0.1
VPS33B-205ENST00000556096 C1QBPQ07021 282 aaKnown RBP15.67■□□□□ 0.1
VPS33B-205ENST00000556096 ZBTB6Q15916 424 aa15.67■□□□□ 0.1
VPS33B-205ENST00000556096 LIN9Q5TKA1 542 aa15.67■□□□□ 0.1
VPS33B-205ENST00000556096 TTC39CQ8N584 583 aa15.67■□□□□ 0.1
VPS33B-205ENST00000556096 HPDLQ96IR7 371 aa15.67■□□□□ 0.1
VPS33B-205ENST00000556096 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.67■□□□□ 0.17e-6■■■■■ 27.7
VPS33B-205ENST00000556096 WNT8AQ9H1J5 351 aa15.67■□□□□ 0.1
VPS33B-205ENST00000556096 CARD9Q9H257 536 aa15.67■□□□□ 0.1
VPS33B-205ENST00000556096 ARFGAP3Q9NP61 516 aa15.67■□□□□ 0.1
VPS33B-205ENST00000556096 RBM12Q9NTZ6 932 aaKnown RBP15.67■□□□□ 0.1
VPS33B-205ENST00000556096 ZNF446Q9NWS9 450 aa15.67■□□□□ 0.1
VPS33B-205ENST00000556096 KIAA0100Q14667 2235 aaKnown RBP15.66■□□□□ 0.1
VPS33B-205ENST00000556096 PGRMC1O00264 195 aaKnown RBP15.66■□□□□ 0.1
VPS33B-205ENST00000556096 CDH5P33151 784 aaPredicted RBP15.66■□□□□ 0.1
VPS33B-205ENST00000556096 VSNL1P62760 191 aa15.66■□□□□ 0.1
VPS33B-205ENST00000556096 PTP4A2Q12974 167 aa15.66■□□□□ 0.1
VPS33B-205ENST00000556096 MESDQ14696 234 aa15.66■□□□□ 0.1
VPS33B-205ENST00000556096 CLUL1Q15846 466 aa15.66■□□□□ 0.1
VPS33B-205ENST00000556096 KCNA10Q16322 511 aa15.66■□□□□ 0.1
VPS33B-205ENST00000556096 PTPROQ16827 1216 aa15.66■□□□□ 0.1
VPS33B-205ENST00000556096 CCSAPQ6IQ19 270 aaPredicted RBP15.66■□□□□ 0.1
VPS33B-205ENST00000556096 SCARA5Q6ZMJ2 495 aa15.66■□□□□ 0.1
VPS33B-205ENST00000556096 RPAINQ86UA6 219 aa15.66■□□□□ 0.1
VPS33B-205ENST00000556096 SESTD1Q86VW0 696 aa15.66■□□□□ 0.1
VPS33B-205ENST00000556096 UBL4BQ8N7F7 174 aa15.66■□□□□ 0.1
VPS33B-205ENST00000556096 TRIM6Q9C030 488 aaPredicted RBP15.66■□□□□ 0.1
VPS33B-205ENST00000556096 ADAM22Q9P0K1 906 aa15.66■□□□□ 0.1
VPS33B-205ENST00000556096 CNTN3Q9P232 1028 aa15.66■□□□□ 0.1
VPS33B-205ENST00000556096 PIN4Q9Y237 131 aaKnown RBP15.66■□□□□ 0.1
VPS33B-205ENST00000556096 RALGAPA2Q2PPJ7 1873 aa15.66■□□□□ 0.1
VPS33B-205ENST00000556096 CITO14578 2027 aa15.66■□□□□ 0.1
VPS33B-205ENST00000556096 DNAH12Q6ZR08 3092 aa15.66■□□□□ 0.1
VPS33B-205ENST00000556096 MED7O43513 233 aa15.65■□□□□ 0.1
VPS33B-205ENST00000556096 ASGR1P07306 291 aa15.65■□□□□ 0.1
VPS33B-205ENST00000556096 COMTP21964 271 aa15.65■□□□□ 0.1
VPS33B-205ENST00000556096 RRM1P23921 792 aa15.65■□□□□ 0.1
VPS33B-205ENST00000556096 MRPS6P82932 125 aaKnown RBP15.65■□□□□ 0.1
VPS33B-205ENST00000556096 XKR4Q5GH76 650 aa15.65■□□□□ 0.1
VPS33B-205ENST00000556096 UBXN11Q5T124 520 aa15.65■□□□□ 0.1
VPS33B-205ENST00000556096 RSPH3Q86UC2 560 aa15.65■□□□□ 0.1
VPS33B-205ENST00000556096 TMEM35BQ8NCS4 154 aa15.65■□□□□ 0.1
VPS33B-205ENST00000556096 CD101Q93033 1021 aa15.65■□□□□ 0.1
VPS33B-205ENST00000556096 ZSWIM1Q9BR11 485 aa15.65■□□□□ 0.1
VPS33B-205ENST00000556096 LRRC1Q9BTT6 524 aa15.65■□□□□ 0.1
VPS33B-205ENST00000556096 SDCBP2Q9H190 292 aa15.65■□□□□ 0.1
VPS33B-205ENST00000556096 MRPL47Q9HD33 250 aaKnown RBP15.65■□□□□ 0.1
VPS33B-205ENST00000556096 CHORDC1Q9UHD1 332 aaPredicted RBP15.65■□□□□ 0.1
VPS33B-205ENST00000556096 M0QZ92 97 aa15.65■□□□□ 0.1
VPS33B-205ENST00000556096 CILPO75339 1184 aa15.65■□□□□ 0.1
VPS33B-205ENST00000556096 MMP8P22894 467 aa15.65■□□□□ 0.1
VPS33B-205ENST00000556096 BRD2P25440 801 aaKnown RBP15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms