RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 SYNPOQ8N3V7 929 aa13.95□□□□□ -0.18
SCAF11-208ENST00000546534 IFT74Q96LB3 600 aa13.95□□□□□ -0.18
SCAF11-208ENST00000546534 POLR3CQ9BUI4 534 aaPredicted RBP13.95□□□□□ -0.18
SCAF11-208ENST00000546534 LSM14BQ9BX40 385 aaKnown RBP13.95□□□□□ -0.18
SCAF11-208ENST00000546534 TM6SF1Q9BZW5 370 aa13.95□□□□□ -0.18
SCAF11-208ENST00000546534 BRMS1Q9HCU9 246 aa13.95□□□□□ -0.18
SCAF11-208ENST00000546534 PTPRHQ9HD43 1115 aa13.95□□□□□ -0.18
SCAF11-208ENST00000546534 SDK1Q7Z5N4 2213 aa13.94□□□□□ -0.18
SCAF11-208ENST00000546534 C1QTNF9BB2RNN3 333 aa13.94□□□□□ -0.18
SCAF11-208ENST00000546534 BTBD18B2RXH4 712 aa13.94□□□□□ -0.18
SCAF11-208ENST00000546534 K7ERI5 159 aa13.94□□□□□ -0.18
SCAF11-208ENST00000546534 MEFVO15553 781 aaPredicted RBP13.94□□□□□ -0.18
SCAF11-208ENST00000546534 VNN2O95498 520 aa13.94□□□□□ -0.18
SCAF11-208ENST00000546534 C1QTNF9P0C862 333 aa13.94□□□□□ -0.18
SCAF11-208ENST00000546534 FDPSP14324 419 aaKnown RBP13.94□□□□□ -0.18
SCAF11-208ENST00000546534 KCNE1P15382 129 aa13.94□□□□□ -0.18
SCAF11-208ENST00000546534 ZNF568Q3ZCX4 644 aa13.94□□□□□ -0.18
SCAF11-208ENST00000546534 PLA2G2CQ5R387 149 aa13.94□□□□□ -0.18
SCAF11-208ENST00000546534 PKN3Q6P5Z2 889 aa13.94□□□□□ -0.18
SCAF11-208ENST00000546534 APPL2Q8NEU8 664 aa13.94□□□□□ -0.18
SCAF11-208ENST00000546534 BEST2Q8NFU1 509 aa13.94□□□□□ -0.18
SCAF11-208ENST00000546534 WASF1Q92558 559 aa13.94□□□□□ -0.18
SCAF11-208ENST00000546534 DDX12PQ92771 950 aa13.94□□□□□ -0.18
SCAF11-208ENST00000546534 TBC1D32Q96NH3 1257 aa13.94□□□□□ -0.18
SCAF11-208ENST00000546534 ACO2Q99798 780 aaKnown RBP13.94□□□□□ -0.18
SCAF11-208ENST00000546534 MKNK1Q9BUB5 465 aa13.94□□□□□ -0.18
SCAF11-208ENST00000546534 DNAJC25Q9H1X3 360 aa13.94□□□□□ -0.18
SCAF11-208ENST00000546534 TRIP11Q15643 1979 aa13.93□□□□□ -0.18
SCAF11-208ENST00000546534 PFKFB2O60825 505 aa13.93□□□□□ -0.18
SCAF11-208ENST00000546534 CCDC192P0DO97 292 aa13.93□□□□□ -0.18
SCAF11-208ENST00000546534 RPA1P27694 616 aa13.93□□□□□ -0.18
SCAF11-208ENST00000546534 MCM4P33991 863 aa13.93□□□□□ -0.18
SCAF11-208ENST00000546534 TNK2Q07912 1038 aa13.93□□□□□ -0.18
SCAF11-208ENST00000546534 ARHGAP29Q52LW3 1261 aa13.93□□□□□ -0.18
SCAF11-208ENST00000546534 PSAPL1Q6NUJ1 521 aa13.93□□□□□ -0.18
SCAF11-208ENST00000546534 UNQ6494/PRO21346Q6UXR6 183 aa13.93□□□□□ -0.18
SCAF11-208ENST00000546534 CENPQQ7L2Z9 268 aaPredicted RBP13.93□□□□□ -0.18
SCAF11-208ENST00000546534 HAUS6Q7Z4H7 955 aa13.93□□□□□ -0.18
SCAF11-208ENST00000546534 ACAP3Q96P50 834 aa13.93□□□□□ -0.18
SCAF11-208ENST00000546534 PGLYRP2Q96PD5 576 aa13.93□□□□□ -0.18
SCAF11-208ENST00000546534 CRISPLD1Q9H336 500 aa13.93□□□□□ -0.18
SCAF11-208ENST00000546534 CNTN3Q9P232 1028 aa13.93□□□□□ -0.18
SCAF11-208ENST00000546534 ZMIZ1Q9ULJ6 1067 aa13.93□□□□□ -0.18
SCAF11-208ENST00000546534 TPCN1Q9ULQ1 816 aa13.93□□□□□ -0.18
SCAF11-208ENST00000546534 PCDHGA5Q9Y5G8 931 aa13.93□□□□□ -0.18
SCAF11-208ENST00000546534 GREB1Q4ZG55 1949 aa13.93□□□□□ -0.18
SCAF11-208ENST00000546534 CCDC163A0A0D9SF12 145 aa13.92□□□□□ -0.18
SCAF11-208ENST00000546534 OR4Q2P0C623 313 aa13.92□□□□□ -0.18
SCAF11-208ENST00000546534 MARCKSP29966 332 aaPredicted RBP13.92□□□□□ -0.18
SCAF11-208ENST00000546534 MCM7P33993 719 aa13.92□□□□□ -0.18
SCAF11-208ENST00000546534 MPLP40238 635 aa13.92□□□□□ -0.18
SCAF11-208ENST00000546534 EPHB3P54753 998 aa13.92□□□□□ -0.18
SCAF11-208ENST00000546534 DUSP4Q13115 394 aa13.92□□□□□ -0.18
SCAF11-208ENST00000546534 RNF43Q68DV7 783 aa13.92□□□□□ -0.18
SCAF11-208ENST00000546534 TCEAL6Q6IPX3 200 aa13.92□□□□□ -0.18
SCAF11-208ENST00000546534 GAREM2Q75VX8 874 aa13.92□□□□□ -0.18
SCAF11-208ENST00000546534 DIS3L2Q8IYB7 885 aaKnown RBP13.92□□□□□ -0.18
SCAF11-208ENST00000546534 KIFAP3Q92845 792 aa13.92□□□□□ -0.18
SCAF11-208ENST00000546534 TCEAL3Q969E4 200 aa13.92□□□□□ -0.18
SCAF11-208ENST00000546534 TARS2Q9BW92 718 aaKnown RBP13.92□□□□□ -0.18
SCAF11-208ENST00000546534 OBP2AQ9NY56 170 aa13.92□□□□□ -0.18
SCAF11-208ENST00000546534 TIMM13Q9Y5L4 95 aaPredicted RBP13.92□□□□□ -0.18
SCAF11-208ENST00000546534 PDCD11Q14690 1871 aaKnown RBP13.92□□□□□ -0.18
SCAF11-208ENST00000546534 ABLIM1O14639 778 aa13.91□□□□□ -0.18
SCAF11-208ENST00000546534 OAZ2O95190 189 aa13.91□□□□□ -0.18
SCAF11-208ENST00000546534 PRAMEF12O95522 483 aa13.91□□□□□ -0.18
SCAF11-208ENST00000546534 MCF2P10911 925 aa13.91□□□□□ -0.18
SCAF11-208ENST00000546534 NOVA1P51513 510 aaKnown RBP13.91□□□□□ -0.18
SCAF11-208ENST00000546534 YWHAHQ04917 246 aaPredicted RBP13.91□□□□□ -0.18
SCAF11-208ENST00000546534 PLD1Q13393 1074 aa13.91□□□□□ -0.18
SCAF11-208ENST00000546534 ECM1Q16610 540 aa13.91□□□□□ -0.18
SCAF11-208ENST00000546534 GPR158Q5T848 1215 aa13.91□□□□□ -0.18
SCAF11-208ENST00000546534 TAS1R3Q7RTX0 852 aa13.91□□□□□ -0.18
SCAF11-208ENST00000546534 TMEM130Q8N3G9 435 aa13.91□□□□□ -0.18
SCAF11-208ENST00000546534 ERMNQ8TAM6 284 aa13.91□□□□□ -0.18
SCAF11-208ENST00000546534 ZC3H10Q96K80 434 aaKnown RBP13.91□□□□□ -0.18
SCAF11-208ENST00000546534 TMEM209Q96SK2 561 aa13.91□□□□□ -0.18
SCAF11-208ENST00000546534 TCHPQ9BT92 498 aa13.91□□□□□ -0.18
SCAF11-208ENST00000546534 MRPL4Q9BYD3 311 aaKnown RBP13.91□□□□□ -0.18
SCAF11-208ENST00000546534 BHMT2Q9H2M3 363 aa13.91□□□□□ -0.18
SCAF11-208ENST00000546534 ATXN3LQ9H3M9 355 aa13.91□□□□□ -0.18
SCAF11-208ENST00000546534 VPS45Q9NRW7 570 aa13.91□□□□□ -0.18
SCAF11-208ENST00000546534 POLR3BQ9NW08 1133 aaPredicted RBP13.91□□□□□ -0.18
SCAF11-208ENST00000546534 SLC8A2Q9UPR5 921 aa13.91□□□□□ -0.18
SCAF11-208ENST00000546534 SLC27A5Q9Y2P5 690 aa13.91□□□□□ -0.18
SCAF11-208ENST00000546534 PHLPP2Q6ZVD8 1323 aa13.9□□□□□ -0.18
SCAF11-208ENST00000546534 CCDC169A6NNP5 214 aa13.9□□□□□ -0.18
SCAF11-208ENST00000546534 M0QZQ0 153 aa13.9□□□□□ -0.18
SCAF11-208ENST00000546534 GIPC1O14908 333 aa13.9□□□□□ -0.18
SCAF11-208ENST00000546534 EPB41L2O43491 1005 aaKnown RBP13.9□□□□□ -0.18
SCAF11-208ENST00000546534 AKAP3O75969 853 aa13.9□□□□□ -0.18
SCAF11-208ENST00000546534 HARSP12081 509 aaKnown RBP13.9□□□□□ -0.18
SCAF11-208ENST00000546534 PROZP22891 400 aa13.9□□□□□ -0.18
SCAF11-208ENST00000546534 ALDH1A3P47895 512 aa13.9□□□□□ -0.18
SCAF11-208ENST00000546534 NPTX2P47972 431 aa13.9□□□□□ -0.18
SCAF11-208ENST00000546534 FOSBP53539 338 aa13.9□□□□□ -0.18
SCAF11-208ENST00000546534 PEX3P56589 373 aa13.9□□□□□ -0.18
SCAF11-208ENST00000546534 ITPRIPL2Q3MIP1 535 aa13.9□□□□□ -0.18
SCAF11-208ENST00000546534 PLK5Q496M5 336 aa13.9□□□□□ -0.18
SCAF11-208ENST00000546534 SEZ6Q53EL9 994 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms