RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	GRM6	O15303	877 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	CXCL14	O95715	111 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	WEE2	P0C1S8	567 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	CD58	P19256	250 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	GNL1	P36915	607 aa	Predicted RBP	10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	RAP1GAP	P47736	663 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	GLUD2	P49448	558 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	AARS	P49588	968 aa	Known RBP eCLIP	10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	MFAP3	P55082	362 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	CDH8	P55286	799 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	YWHAH	Q04917	246 aa	Predicted RBP	10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	UBE3A	Q05086	875 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	KCNMA1	Q12791	1236 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	NR1I3	Q14994	352 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	PTPN21	Q16825	1174 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	ZNF697	Q5TEC3	545 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	TRIM65	Q6PJ69	517 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	DPH6	Q7L8W6	267 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	ADGRF2	Q8IZF7	708 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	TMEM86A	Q8N2M4	240 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	PDCL2	Q8N4E4	241 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	NEK11	Q8NG66	645 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	LMO3	Q8TAP4	145 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	GDPD5	Q8WTR4	605 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	AUTS2	Q8WXX7	1259 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	LRCH3	Q96II8	777 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	TCF25	Q9BQ70	676 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	HERC2P3	Q9BVR0	1158 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	SMYD3	Q9H7B4	428 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	VRTN	Q9H8Y1	702 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	TLR9	Q9NR96	1032 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	MRPL17	Q9NRX2	175 aa	Known RBP	10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	FAM207A	Q9NSI2	230 aa	Predicted RBP	10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	L1RE1	Q9UN81	338 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	LZTS1	Q9Y250	596 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	SSX2IP	Q9Y2D8	614 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	PDGFRB	P09619	1106 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	TYMP	P19971	482 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	FGFR3	P22607	806 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	TBXAS1	P24557	533 aa	Predicted RBP	10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	USP8	P40818	1118 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	ASPA	P45381	313 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	LHX1	P48742	406 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	KLK7	P49862	253 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	ARPP19	P56211	112 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	YWHAE	P62258	255 aa	Known RBP	10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	APBA1	Q02410	837 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	CUL2	Q13617	745 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	RAPGEF1	Q13905	1077 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	PTPRO	Q16827	1216 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	ARHGAP44	Q17R89	818 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	SOWAHA	Q2M3V2	549 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	CTXN3	Q4LDR2	81 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	HABP4	Q5JVS0	413 aa	Known RBP	10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	RTP2	Q5QGT7	225 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	VARS2	Q5ST30	1063 aa	Known RBP	10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	KLHDC7A	Q5VTJ3	777 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	PLPP4	Q5VZY2	271 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	OVOS1	Q6IE37	1185 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	ZNF280D	Q6N043	979 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	PHLDB3	Q6NSJ2	640 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	PDXDC1	Q6P996	788 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	GJB7	Q6PEY0	223 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	PRSS55	Q6UWB4	352 aa	Predicted RBP	10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	ANKS3	Q6ZW76	656 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	ARHGEF19	Q8IW93	802 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	FAM81B	Q96LP2	452 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	FAM161B	Q96MY7	647 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	ERGIC2	Q96RQ1	377 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	MRPL45	Q9BRJ2	306 aa	Known RBP	10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	VN1R3	Q9BXE9	311 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	DNAI2	Q9GZS0	605 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	CYP3A43	Q9HB55	503 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	NGRN	Q9NPE2	291 aa	Known RBP	10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	APEX2	Q9UBZ4	518 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	DNAJC12	Q9UKB3	198 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	PCDHB4	Q9Y5E5	795 aa		10.87	□□□□□ -0.67
CPSF7-221	ENST00000543545	TMEM265	A0A087WTH1	108 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	EPOP	A6NHQ4	379 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545		A8MXQ7	604 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	TACC1	O75410	805 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	FAM163B	P0C2L3	166 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	CTSA	P10619	480 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	KRT5	P13647	590 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	TRIM21	P19474	475 aa	Known RBP	10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	WARS	P23381	471 aa	Known RBP	10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	DNAJB1	P25685	340 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	ERVFC1	P60507	584 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	POLR2F	P61218	127 aa	Known RBP	10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	TSPY1	Q01534	308 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	DSG1	Q02413	1049 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	SMC1A	Q14683	1233 aa	Known RBP	10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	PSMD5	Q16401	504 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	SARM1	Q6SZW1	724 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	ENOSF1	Q7L5Y1	443 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	CACNA2D4	Q7Z3S7	1137 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	TTC39C	Q8N584	583 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	KAT5	Q92993	513 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	FAXDC2	Q96IV6	333 aa		10.86	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms