RNA–Protein interactions for RNA: ENST00000521559.1

VPS13B-209, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 3

Gene VPS13B, Length 466 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-209ENST00000521559 FOXR2Q6PJQ5 311 aa4.18□□□□□ -1.74
VPS13B-209ENST00000521559 PCSK4Q6UW60 755 aa4.18□□□□□ -1.74
VPS13B-209ENST00000521559 FAM43AQ8N2R8 423 aa4.18□□□□□ -1.74
VPS13B-209ENST00000521559 OR56A1Q8NGH5 318 aa4.18□□□□□ -1.74
VPS13B-209ENST00000521559 COG1Q8WTW3 980 aa4.18□□□□□ -1.74
VPS13B-209ENST00000521559 SLC9A6Q92581 669 aa4.18□□□□□ -1.74
VPS13B-209ENST00000521559 HOXB13Q92826 284 aaPredicted RBP4.18□□□□□ -1.74
VPS13B-209ENST00000521559 DDX17Q92841 729 aaKnown RBP4.18□□□□□ -1.74
VPS13B-209ENST00000521559 CAVIN3Q969G5 261 aa4.18□□□□□ -1.74
VPS13B-209ENST00000521559 LRRC59Q96AG4 307 aaKnown RBP4.18□□□□□ -1.74
VPS13B-209ENST00000521559 CRAMP1Q96RY5 1269 aa4.18□□□□□ -1.74
VPS13B-209ENST00000521559 POLR3GLQ9BT43 218 aa4.18□□□□□ -1.74
VPS13B-209ENST00000521559 DMRT3Q9NQL9 472 aa4.18□□□□□ -1.74
VPS13B-209ENST00000521559 ZNF277Q9NRM2 450 aaPredicted RBP4.18□□□□□ -1.74
VPS13B-209ENST00000521559 TERF2IPQ9NYB0 399 aa4.18□□□□□ -1.74
VPS13B-209ENST00000521559 DKK2Q9UBU2 259 aa4.18□□□□□ -1.74
VPS13B-209ENST00000521559 AJAP1Q9UKB5 411 aaPredicted RBP4.18□□□□□ -1.74
VPS13B-209ENST00000521559 CDC42BPGQ6DT37 1551 aa4.18□□□□□ -1.74
VPS13B-209ENST00000521559 KIF7Q2M1P5 1343 aa4.18□□□□□ -1.74
VPS13B-209ENST00000521559 KNDC1Q76NI1 1749 aa4.18□□□□□ -1.74
VPS13B-209ENST00000521559 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.18□□□□□ -1.74
VPS13B-209ENST00000521559 POLR3AO14802 1390 aaPredicted RBP4.17□□□□□ -1.74
VPS13B-209ENST00000521559 CCDC7Q96M83 1385 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 TULP4Q9NRJ4 1543 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 COL4A3Q01955 1670 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 GRID2IPA4D2P6 1211 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 LPXNO60711 386 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 GPR32O75388 356 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 CDKL5O76039 1030 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 LMNAP02545 664 aaKnown RBP4.17□□□□□ -1.74
VPS13B-209ENST00000521559 CFIP05156 583 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 BMP5P22003 454 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 TGM1P22735 817 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 ZFP36P26651 326 aaKnown RBP4.17□□□□□ -1.74
VPS13B-209ENST00000521559 WASP42768 502 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 PTTG1IPP53801 180 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 METRNLQ641Q3 311 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 KRTAP5-3Q6L8H2 238 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 ZNF529Q6P280 563 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 PGM2L1Q6PCE3 622 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 SEM1Q6ZVN7 128 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 DDX42Q86XP3 938 aaKnown RBP eCLIP4.17□□□□□ -1.74
VPS13B-209ENST00000521559 MAPKAPK5Q8IW41 473 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 CMTR2Q8IYT2 770 aaKnown RBP4.17□□□□□ -1.74
VPS13B-209ENST00000521559 CNTD1Q8N815 330 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 FBXO18Q8NFZ0 1043 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 NLGN4YQ8NFZ3 816 aaPredicted RBP4.17□□□□□ -1.74
VPS13B-209ENST00000521559 CCHCR1Q8TD31 782 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 STON2Q8WXE9 905 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 PANK3Q9H999 370 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 KLHL11Q9NVR0 708 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 MKS1Q9NXB0 559 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 ZNHIT2Q9UHR6 403 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 ATP8A1Q9Y2Q0 1164 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 MRFAP1Q9Y605 127 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 PPIP5K1Q6PFW1 1433 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 ADGRB2O60241 1585 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 SPATA31A3Q5VYP0 1347 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 PNPLA7Q6ZV29 1317 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 ATP7BP35670 1465 aa4.17□□□□□ -1.74
VPS13B-209ENST00000521559 SBNO1A3KN83 1393 aa4.16□□□□□ -1.74
VPS13B-209ENST00000521559 BRD4O60885 1362 aaPredicted RBP4.16□□□□□ -1.74
VPS13B-209ENST00000521559 CPSF1Q10570 1443 aaKnown RBP4.16□□□□□ -1.74
VPS13B-209ENST00000521559 A0A1B0GTW7 788 aa4.16□□□□□ -1.74
VPS13B-209ENST00000521559 MARCH11A6NNE9 402 aa4.16□□□□□ -1.74
VPS13B-209ENST00000521559 RPLP2P05387 115 aaKnown RBP4.16□□□□□ -1.74
VPS13B-209ENST00000521559 CKBP12277 381 aa4.16□□□□□ -1.74
VPS13B-209ENST00000521559 NCLP19338 710 aaKnown RBP4.16□□□□□ -1.74
VPS13B-209ENST00000521559 PROZP22891 400 aa4.16□□□□□ -1.74
VPS13B-209ENST00000521559 GCSHP23434 173 aa4.16□□□□□ -1.74
VPS13B-209ENST00000521559 ALDH1A3P47895 512 aa4.16□□□□□ -1.74
VPS13B-209ENST00000521559 NANOS3P60323 173 aaKnown RBP4.16□□□□□ -1.74
VPS13B-209ENST00000521559 KRTAP15-1Q3LI76 137 aa4.16□□□□□ -1.74
VPS13B-209ENST00000521559 STRIP1Q5VSL9 837 aa4.16□□□□□ -1.74
VPS13B-209ENST00000521559 Q6YL49 198 aa4.16□□□□□ -1.74
VPS13B-209ENST00000521559 MIGA2Q7L4E1 593 aa4.16□□□□□ -1.74
VPS13B-209ENST00000521559 TMEM132CQ8N3T6 1108 aa4.16□□□□□ -1.74
VPS13B-209ENST00000521559 FITM2Q8N6M3 262 aa4.16□□□□□ -1.74
VPS13B-209ENST00000521559 BOD1Q96IK1 185 aa4.16□□□□□ -1.74
VPS13B-209ENST00000521559 TEX101Q9BY14 249 aa4.16□□□□□ -1.74
VPS13B-209ENST00000521559 LDAHQ9H6V9 325 aa4.16□□□□□ -1.74
VPS13B-209ENST00000521559 TTC21BQ7Z4L5 1316 aa4.16□□□□□ -1.74
VPS13B-209ENST00000521559 KTN1Q86UP2 1357 aaKnown RBP4.15□□□□□ -1.74
VPS13B-209ENST00000521559 ANKRD36BQ8N2N9 1353 aa4.15□□□□□ -1.74
VPS13B-209ENST00000521559 ARHGEF28Q8N1W1 1705 aaKnown RBP4.15□□□□□ -1.74
VPS13B-209ENST00000521559 SSH2Q76I76 1423 aa4.15□□□□□ -1.74
VPS13B-209ENST00000521559 KLHL33A6NCF5 533 aa4.15□□□□□ -1.75
VPS13B-209ENST00000521559 UNC119BA6NIH7 251 aa4.15□□□□□ -1.75
VPS13B-209ENST00000521559 GPANK1O95872 356 aa4.15□□□□□ -1.75
VPS13B-209ENST00000521559 NUDT3O95989 172 aa4.15□□□□□ -1.75
VPS13B-209ENST00000521559 EGR2P11161 476 aaPredicted RBP4.15□□□□□ -1.75
VPS13B-209ENST00000521559 POU3F3P20264 500 aaPredicted RBP4.15□□□□□ -1.75
VPS13B-209ENST00000521559 DDCP20711 480 aa4.15□□□□□ -1.75
VPS13B-209ENST00000521559 IBSPP21815 317 aaPredicted RBP4.15□□□□□ -1.75
VPS13B-209ENST00000521559 SEPT2Q15019 361 aa4.15□□□□□ -1.75
VPS13B-209ENST00000521559 PPP4R3AQ6IN85 833 aa4.15□□□□□ -1.75
VPS13B-209ENST00000521559 RSPH3Q86UC2 560 aa4.15□□□□□ -1.75
VPS13B-209ENST00000521559 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.15□□□□□ -1.75
VPS13B-209ENST00000521559 RHOT1Q8IXI2 618 aa4.15□□□□□ -1.75
VPS13B-209ENST00000521559 PPM1NQ8N819 430 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms