RNA–Protein interactions for RNA: ENST00000521559.1

VPS13B-209, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 3

Gene VPS13B, Length 466 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-209ENST00000521559 AEBP2Q6ZN18 517 aaPredicted RBP18.93■□□□□ 0.62
VPS13B-209ENST00000521559 CHIC1Q5VXU3 224 aa18.39■□□□□ 0.53
VPS13B-209ENST00000521559 SENP3Q9H4L4 574 aaPredicted RBP16.23■□□□□ 0.19
VPS13B-209ENST00000521559 PHF23Q9BUL5 403 aaPredicted RBP16.08■□□□□ 0.16
VPS13B-209ENST00000521559 FOXD1Q16676 465 aa14.99□□□□□ -0.01
VPS13B-209ENST00000521559 PLPPR3Q6T4P5 718 aa14.91□□□□□ -0.02
VPS13B-209ENST00000521559 ADRA2BP18089 450 aa14.24□□□□□ -0.13
VPS13B-209ENST00000521559 PPP6R1Q9UPN7 881 aa14.24□□□□□ -0.13
VPS13B-209ENST00000521559 PIAS4Q8N2W9 510 aaPredicted RBP14.14□□□□□ -0.15
VPS13B-209ENST00000521559 MSH5O43196 834 aa14.01□□□□□ -0.17
VPS13B-209ENST00000521559 SCAF1Q9H7N4 1312 aaKnown RBP13.2□□□□□ -0.3
VPS13B-209ENST00000521559 PPP4R3CPQ6ZMV5 832 aa13.08□□□□□ -0.32
VPS13B-209ENST00000521559 POTEDQ86YR6 584 aa12.98□□□□□ -0.33
VPS13B-209ENST00000521559 MAPK8IP2Q13387 824 aaPredicted RBP12.96□□□□□ -0.33
VPS13B-209ENST00000521559 DMRT2Q9Y5R5 561 aa12.89□□□□□ -0.35
VPS13B-209ENST00000521559 CNKSR2Q8WXI2 1034 aa12.79□□□□□ -0.36
VPS13B-209ENST00000521559 NCBP3Q53F19 620 aaKnown RBP12.78□□□□□ -0.36
VPS13B-209ENST00000521559 RNF216Q9NWF9 866 aaPredicted RBP12.58□□□□□ -0.4
VPS13B-209ENST00000521559 HOXD11P31277 338 aaPredicted RBP12.55□□□□□ -0.4
VPS13B-209ENST00000521559 KCNA4P22459 653 aa12.51□□□□□ -0.41
VPS13B-209ENST00000521559 NPM3O75607 178 aaKnown RBP12.47□□□□□ -0.41
VPS13B-209ENST00000521559 DCAF8L1A6NGE4 600 aa12.36□□□□□ -0.43
VPS13B-209ENST00000521559 DNAJC5BQ9UF47 199 aa12.19□□□□□ -0.46
VPS13B-209ENST00000521559 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12□□□□□ -0.49
VPS13B-209ENST00000521559 SLC4A1APQ9BWU0 796 aaKnown RBP11.94□□□□□ -0.5
VPS13B-209ENST00000521559 RNF39Q9H2S5 420 aa11.92□□□□□ -0.5
VPS13B-209ENST00000521559 C1QBPQ07021 282 aaKnown RBP11.83□□□□□ -0.52
VPS13B-209ENST00000521559 CACNB1Q02641 598 aaPredicted RBP11.79□□□□□ -0.52
VPS13B-209ENST00000521559 SLC4A2P04920 1241 aa11.78□□□□□ -0.52
VPS13B-209ENST00000521559 U3KPZ7 1027 aaPredicted RBP11.71□□□□□ -0.53
VPS13B-209ENST00000521559 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.65□□□□□ -0.54
VPS13B-209ENST00000521559 HNRNPUL2Q1KMD3 747 aaKnown RBP11.65□□□□□ -0.54
VPS13B-209ENST00000521559 FOXD4L1Q9NU39 408 aa11.63□□□□□ -0.55
VPS13B-209ENST00000521559 APLP2Q06481 763 aa11.61□□□□□ -0.55
VPS13B-209ENST00000521559 MYCNP04198 464 aaPredicted RBP11.59□□□□□ -0.55
VPS13B-209ENST00000521559 SAMD1Q6SPF0 538 aaPredicted RBP11.56□□□□□ -0.56
VPS13B-209ENST00000521559 CAPN15O75808 1086 aa11.46□□□□□ -0.57
VPS13B-209ENST00000521559 ZBTB22O15209 634 aa11.45□□□□□ -0.58
VPS13B-209ENST00000521559 SPINK5Q9NQ38 1064 aaPredicted RBP11.42□□□□□ -0.58
VPS13B-209ENST00000521559 ZNF219Q9P2Y4 722 aaPredicted RBP11.39□□□□□ -0.59
VPS13B-209ENST00000521559 TRHP20396 242 aaPredicted RBP11.34□□□□□ -0.59
VPS13B-209ENST00000521559 EHMT2Q96KQ7 1210 aa11.34□□□□□ -0.59
VPS13B-209ENST00000521559 ATXN8OSP0DMR3 200 aa11.29□□□□□ -0.6
VPS13B-209ENST00000521559 CSRNP3Q8WYN3 585 aa11.29□□□□□ -0.6
VPS13B-209ENST00000521559 DSG3P32926 999 aa11.27□□□□□ -0.61
VPS13B-209ENST00000521559 ABCB7O75027 752 aa11.17□□□□□ -0.62
VPS13B-209ENST00000521559 ATF5Q9Y2D1 282 aaPredicted RBP11.17□□□□□ -0.62
VPS13B-209ENST00000521559 POLA2Q14181 598 aa11.11□□□□□ -0.63
VPS13B-209ENST00000521559 ZBTB12Q9Y330 459 aaPredicted RBP11.02□□□□□ -0.65
VPS13B-209ENST00000521559 FBLN2P98095 1184 aa10.88□□□□□ -0.67
VPS13B-209ENST00000521559 RBM42Q9BTD8 480 aaKnown RBP10.85□□□□□ -0.67
VPS13B-209ENST00000521559 OSCARQ8IYS5 282 aa10.71□□□□□ -0.69
VPS13B-209ENST00000521559 MKRN4PQ13434 485 aaPredicted RBP10.69□□□□□ -0.7
VPS13B-209ENST00000521559 SPDYE2BA6NHP3 402 aa10.66□□□□□ -0.7
VPS13B-209ENST00000521559 SPDYE6P0CI01 402 aa10.66□□□□□ -0.7
VPS13B-209ENST00000521559 SPDYE2Q495Y8 402 aa10.66□□□□□ -0.7
VPS13B-209ENST00000521559 AKT1S1Q96B36 256 aa10.64□□□□□ -0.71
VPS13B-209ENST00000521559 ZNF692Q9BU19 519 aaPredicted RBP10.57□□□□□ -0.72
VPS13B-209ENST00000521559 SSUH2Q9Y2M2 353 aa10.5□□□□□ -0.73
VPS13B-209ENST00000521559 REM2Q8IYK8 340 aaPredicted RBP10.49□□□□□ -0.73
VPS13B-209ENST00000521559 SPDYE4A6NLX3 237 aa10.44□□□□□ -0.74
VPS13B-209ENST00000521559 CHRDL2Q6WN34 429 aa10.4□□□□□ -0.74
VPS13B-209ENST00000521559 PABPN1Q86U42 306 aaKnown RBP eCLIP10.4□□□□□ -0.74
VPS13B-209ENST00000521559 SPDYE1Q8NFV5 336 aaPredicted RBP10.4□□□□□ -0.74
VPS13B-209ENST00000521559 PITPNM1O00562 1244 aa10.35□□□□□ -0.75
VPS13B-209ENST00000521559 CLEC11AQ9Y240 323 aa10.33□□□□□ -0.76
VPS13B-209ENST00000521559 STAG3Q9UJ98 1225 aa10.29□□□□□ -0.76
VPS13B-209ENST00000521559 POTEHQ6S545 545 aa10.27□□□□□ -0.77
VPS13B-209ENST00000521559 FKBP8Q14318 412 aa10.26□□□□□ -0.77
VPS13B-209ENST00000521559 PRR29P0C7W0 189 aa10.23□□□□□ -0.77
VPS13B-209ENST00000521559 FXR2P51116 673 aaKnown RBP eCLIP10.22□□□□□ -0.77
VPS13B-209ENST00000521559 PROM2Q8N271 834 aa10.21□□□□□ -0.77
VPS13B-209ENST00000521559 PIP4P2Q8N4L2 257 aa10.2□□□□□ -0.78
VPS13B-209ENST00000521559 PRKAR2AP13861 404 aaKnown RBP10.12□□□□□ -0.79
VPS13B-209ENST00000521559 FBXO3Q9UK99 471 aa10.05□□□□□ -0.8
VPS13B-209ENST00000521559 CHADLQ6NUI6 762 aa10.03□□□□□ -0.8
VPS13B-209ENST00000521559 PLEKHG5O94827 1062 aa10.02□□□□□ -0.81
VPS13B-209ENST00000521559 CREBZFQ9NS37 354 aa9.99□□□□□ -0.81
VPS13B-209ENST00000521559 HAX1O00165 279 aa9.97□□□□□ -0.81
VPS13B-209ENST00000521559 FARP1Q9Y4F1 1045 aaPredicted RBP9.97□□□□□ -0.81
VPS13B-209ENST00000521559 MIER1Q8N108 512 aa9.95□□□□□ -0.82
VPS13B-209ENST00000521559 NPM1P06748 294 aaKnown RBP eCLIP9.93□□□□□ -0.82
VPS13B-209ENST00000521559 PLCD3Q8N3E9 789 aa9.93□□□□□ -0.82
VPS13B-209ENST00000521559 ZBTB47Q9UFB7 747 aaPredicted RBP9.89□□□□□ -0.83
VPS13B-209ENST00000521559 C19orf67A6NJJ6 358 aa9.87□□□□□ -0.83
VPS13B-209ENST00000521559 MNX1P50219 401 aaPredicted RBP9.83□□□□□ -0.84
VPS13B-209ENST00000521559 VASPP50552 380 aaPredicted RBP9.83□□□□□ -0.84
VPS13B-209ENST00000521559 PAK3O75914 559 aaPredicted RBP9.82□□□□□ -0.84
VPS13B-209ENST00000521559 CD44P16070 742 aaKnown RBP9.82□□□□□ -0.84
VPS13B-209ENST00000521559 SP7Q8TDD2 431 aaPredicted RBP9.8□□□□□ -0.84
VPS13B-209ENST00000521559 CLCN6P51797 869 aa9.75□□□□□ -0.85
VPS13B-209ENST00000521559 EVX2Q03828 476 aa9.75□□□□□ -0.85
VPS13B-209ENST00000521559 KLHL34Q8N239 644 aa9.75□□□□□ -0.85
VPS13B-209ENST00000521559 ZRANB1Q9UGI0 708 aa9.74□□□□□ -0.85
VPS13B-209ENST00000521559 ZNF579Q8NAF0 562 aaKnown RBP9.69□□□□□ -0.86
VPS13B-209ENST00000521559 TSPYL2Q9H2G4 693 aaPredicted RBP9.68□□□□□ -0.86
VPS13B-209ENST00000521559 NUBP1P53384 320 aa9.66□□□□□ -0.86
VPS13B-209ENST00000521559 FAM212AQ96EL1 285 aa9.66□□□□□ -0.86
VPS13B-209ENST00000521559 RASEFQ8IZ41 740 aa9.65□□□□□ -0.86
VPS13B-209ENST00000521559 GABBR2O75899 941 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms