RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 FGFR3P22607 806 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 ZNF165P49910 485 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 KCNJ12Q14500 433 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 SMC1AQ14683 1233 aaKnown RBP10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 PSMD5Q16401 504 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 PTPROQ16827 1216 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 CCDC142Q17RM4 750 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 ZNF699Q32M78 642 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 USP41Q3LFD5 358 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 VARS2Q5ST30 1063 aaKnown RBP10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 KIAA1841Q6NSI8 718 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 RSPO2Q6UXX9 243 aaPredicted RBP10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 USP37Q86T82 979 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 LUZP1Q86V48 1076 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 OSTM1Q86WC4 334 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 LRRC52Q8N7C0 313 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 SUSD3Q96L08 255 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 TTPALQ9BTX7 342 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 FAM117AQ9C073 453 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 LMAN2LQ9H0V9 348 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 XYLT2Q9H1B5 865 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 HSD3B7Q9H2F3 369 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 SMYD3Q9H7B4 428 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 APOBEC3GQ9HC16 384 aaKnown RBP10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 METTL14Q9HCE5 456 aaKnown RBP10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 TMEM8AQ9HCN3 771 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 MAGEC2Q9UBF1 373 aaPredicted RBP10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 NXF1Q9UBU9 619 aaKnown RBP10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 L1RE1Q9UN81 338 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 LZTS1Q9Y250 596 aa10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 R3HCC1Q9Y3T6 440 aaKnown RBP10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.54□□□□□ -0.72
TOPBP1-209ENST00000513818 C2orf71A6NGG8 1288 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 KPNA7A9QM74 516 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 M0QZQ0 153 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 PES1O00541 588 aaKnown RBP10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 LINC01565O15544 149 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 AFPP02771 609 aaKnown RBP10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 CNPP09543 421 aaKnown RBP10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 OR4Q2P0C623 313 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 ODC1P11926 461 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 ATP1A3P13637 1013 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 PNPLA4P41247 253 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 NRIP1P48552 1158 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 FMO5P49326 533 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 AP3M2P53677 418 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 MARSP56192 900 aaKnown RBP10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 ARPP19P56211 112 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 DSG1Q02413 1049 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 KCNH2Q12809 1159 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 LRMPQ12912 555 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 ELAVL2Q12926 359 aaKnown RBP10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 IQCB1Q15051 598 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 PTPN21Q16825 1174 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 CDKAL1Q5VV42 579 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 KIAA0319Q5VV43 1072 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 WSCD1Q658N2 575 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 KRT39Q6A163 491 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 LLGL2Q6P1M3 1020 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 RNF214Q8ND24 703 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 LNX1Q8TBB1 728 aaPredicted RBP10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 TMEM209Q96SK2 561 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 MRPL45Q9BRJ2 306 aaKnown RBP10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 SDCBP2Q9H190 292 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 NSUN3Q9H649 340 aaKnown RBP10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 IGFLR1Q9H665 355 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 MRPL17Q9NRX2 175 aaKnown RBP10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 CHST7Q9NS84 486 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 NME7Q9Y5B8 376 aa10.53□□□□□ -0.72
TOPBP1-209ENST00000513818 CARNS1A5YM72 827 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 IKBKBO14920 756 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 SYN3O14994 580 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 TEX28O15482 410 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 TRAPPC3O43617 180 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 STX10O60499 249 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 LILRB3O75022 631 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 ASS1P00966 412 aaKnown RBP10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 ACAT1P24752 427 aaKnown RBP10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 GTF2H1P32780 548 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 CDH8P55286 799 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 TNNC1P63316 161 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 NOP14P78316 857 aaKnown RBP10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 APBA1Q02410 837 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 ENPEPQ07075 957 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 HYAL1Q12794 435 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 MYO1EQ12965 1108 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 ORC1Q13415 861 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 KRT31Q15323 416 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 MAN2A1Q16706 1144 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 WDR72Q3MJ13 1102 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 TCP11X2Q5H9J9 407 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 CT47A1Q5JQC4 288 aaPredicted RBP10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 LRSAM1Q6UWE0 723 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 FAM114A1Q8IWE2 563 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 ADGRF2Q8IZF7 708 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 PDCL2Q8N4E4 241 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 MRPL43Q8N983 215 aaKnown RBP10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 VN1R2Q8NFZ6 395 aa10.52□□□□□ -0.73
TOPBP1-209ENST00000513818 OR10T2Q8NGX3 314 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms