RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 AGAP1Q9UPQ3 857 aa4.29□□□□□ -1.72
VPS50-216ENST00000484954 COX11Q9Y6N1 276 aa4.29□□□□□ -1.72
VPS50-216ENST00000484954 KAT6AQ92794 2004 aa4.29□□□□□ -1.72
VPS50-216ENST00000484954 CCDC195A0A1B0GUA6 201 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 LRRC3CA6NJW4 275 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 ZNF785A8K8V0 405 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 VWC2LB2RUY7 222 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 INO80B-WBP1J3KQ70 363 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 TOR1BO14657 336 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 YY2O15391 372 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 MATN4O95460 622 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 PPP3CBP16298 524 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 PDCP20941 246 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 CCND1P24385 295 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 CD38P28907 300 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 FPGSQ05932 587 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 KIAA0895LQ68EN5 471 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 PPP4R3AQ6IN85 833 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 TAPT1Q6NXT6 567 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 TTC7BQ86TV6 843 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 ARHGEF25Q86VW2 580 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 MYCBPAPQ8TBZ2 947 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 TFAP2BQ92481 460 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 DUSP26Q9BV47 211 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 INO80BQ9C086 356 aaPredicted RBP4.28□□□□□ -1.72
VPS50-216ENST00000484954 KLK15Q9H2R5 256 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 SLAMF7Q9NQ25 335 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 INTS13Q9NVM9 706 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 LRIT1Q9P2V4 623 aa4.28□□□□□ -1.72
VPS50-216ENST00000484954 PROM1O43490 865 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 PEX1O43933 1283 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 IGLV2-14P01704 120 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 GJB1P08034 283 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 SRGNP10124 158 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 CDK4P11802 303 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 CHRM3P20309 590 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 PRDX5P30044 214 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 FOLR3P41439 243 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 RECQLP46063 649 aaPredicted RBP4.27□□□□□ -1.73
VPS50-216ENST00000484954 ANXA11P50995 505 aaKnown RBP4.27□□□□□ -1.73
VPS50-216ENST00000484954 MAPK10P53779 464 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 RPS7P62081 194 aaKnown RBP4.27□□□□□ -1.73
VPS50-216ENST00000484954 PTPROQ16827 1216 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 ERCC6LQ2NKX8 1250 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 SLC30A10Q6XR72 485 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 PEG10Q86TG7 708 aaKnown RBP4.27□□□□□ -1.73
VPS50-216ENST00000484954 FAM90A1Q86YD7 464 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 MIER2Q8N344 545 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 PRR18Q8N4B5 295 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 TOR1AIP2Q8NFQ8 470 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 CAGE1Q8TC20 777 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 SLC9A6Q92581 669 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 FBXL20Q96IG2 436 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 HOMER2Q9NSB8 354 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 ASB6Q9NWX5 421 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 ETAA1Q9NY74 926 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 DMTF1Q9Y222 760 aa4.27□□□□□ -1.73
VPS50-216ENST00000484954 ADM5C9JUS6 153 aa4.26□□□□□ -1.73
VPS50-216ENST00000484954 POLRMTO00411 1230 aaKnown RBP4.26□□□□□ -1.73
VPS50-216ENST00000484954 SNUPNO95149 360 aaKnown RBP4.26□□□□□ -1.73
VPS50-216ENST00000484954 RHOP08100 348 aa4.26□□□□□ -1.73
VPS50-216ENST00000484954 CHRM2P08172 466 aa4.26□□□□□ -1.73
VPS50-216ENST00000484954 TOB1P50616 345 aaPredicted RBP4.26□□□□□ -1.73
VPS50-216ENST00000484954 MAP2K6P52564 334 aa4.26□□□□□ -1.73
VPS50-216ENST00000484954 ZNF135P52742 658 aaPredicted RBP4.26□□□□□ -1.73
VPS50-216ENST00000484954 CACNA2D1P54289 1103 aa4.26□□□□□ -1.73
VPS50-216ENST00000484954 POU6F2P78424 691 aaPredicted RBP4.26□□□□□ -1.73
VPS50-216ENST00000484954 NOGQ13253 232 aa4.26□□□□□ -1.73
VPS50-216ENST00000484954 PREPLQ4J6C6 727 aaPredicted RBP4.26□□□□□ -1.73
VPS50-216ENST00000484954 USP45Q70EL2 814 aa4.26□□□□□ -1.73
VPS50-216ENST00000484954 HEATR3Q7Z4Q2 680 aa4.26□□□□□ -1.73
VPS50-216ENST00000484954 PPP1R3BQ86XI6 285 aa4.26□□□□□ -1.73
VPS50-216ENST00000484954 CPA6Q8N4T0 437 aa4.26□□□□□ -1.73
VPS50-216ENST00000484954 SNX19Q92543 992 aa4.26□□□□□ -1.73
VPS50-216ENST00000484954 RGMAQ96B86 450 aa4.26□□□□□ -1.73
VPS50-216ENST00000484954 TRIB1Q96RU8 372 aa4.26□□□□□ -1.73
VPS50-216ENST00000484954 GTPBP4Q9BZE4 634 aaKnown RBP4.26□□□□□ -1.73
VPS50-216ENST00000484954 BRD9Q9H8M2 597 aa4.26□□□□□ -1.73
VPS50-216ENST00000484954 SEMA4GQ9NTN9 838 aa4.26□□□□□ -1.73
VPS50-216ENST00000484954 ABCF2Q9UG63 623 aa4.26□□□□□ -1.73
VPS50-216ENST00000484954 LUC7L2Q9Y383 392 aaKnown RBP4.26□□□□□ -1.73
VPS50-216ENST00000484954 VPS4BO75351 444 aa4.25□□□□□ -1.73
VPS50-216ENST00000484954 KIF20AO95235 890 aa4.25□□□□□ -1.73
VPS50-216ENST00000484954 AHSGP02765 367 aa4.25□□□□□ -1.73
VPS50-216ENST00000484954 FTLP02792 175 aaPredicted RBP4.25□□□□□ -1.73
VPS50-216ENST00000484954 POU2F2P09086 479 aa4.25□□□□□ -1.73
VPS50-216ENST00000484954 SMARCA1P28370 1054 aa4.25□□□□□ -1.73
VPS50-216ENST00000484954 NPTX2P47972 431 aa4.25□□□□□ -1.73
VPS50-216ENST00000484954 PIGFQ07326 219 aa4.25□□□□□ -1.73
VPS50-216ENST00000484954 BOP1Q14137 746 aaKnown RBP4.25□□□□□ -1.73
VPS50-216ENST00000484954 TXNRD1Q16881 649 aa4.25□□□□□ -1.73
VPS50-216ENST00000484954 TMEM240Q5SV17 173 aa4.25□□□□□ -1.73
VPS50-216ENST00000484954 KAZNQ674X7 775 aa4.25□□□□□ -1.73
VPS50-216ENST00000484954 TAF2Q6P1X5 1199 aa4.25□□□□□ -1.73
VPS50-216ENST00000484954 MICALCLQ6ZW33 695 aa4.25□□□□□ -1.73
VPS50-216ENST00000484954 PDSS2Q86YH6 399 aa4.25□□□□□ -1.73
VPS50-216ENST00000484954 SH2D3CQ8N5H7 860 aa4.25□□□□□ -1.73
VPS50-216ENST00000484954 CELF5Q8N6W0 485 aaKnown RBP4.25□□□□□ -1.73
VPS50-216ENST00000484954 C3orf20Q8ND61 904 aa4.25□□□□□ -1.73
VPS50-216ENST00000484954 POC1BQ8TC44 478 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms