RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 SLC30A5Q8TAD4 765 aa8.83□□□□□ -1
USP4-210ENST00000483212 LNX1Q8TBB1 728 aaPredicted RBP8.83□□□□□ -1
USP4-210ENST00000483212 EPS8L1Q8TE68 723 aa8.83□□□□□ -1
USP4-210ENST00000483212 KBTBD7Q8WVZ9 684 aa8.83□□□□□ -1
USP4-210ENST00000483212 RSPH1Q8WYR4 309 aa8.83□□□□□ -1
USP4-210ENST00000483212 DDX1Q92499 740 aaKnown RBP8.83□□□□□ -1
USP4-210ENST00000483212 BADQ92934 168 aa8.83□□□□□ -1
USP4-210ENST00000483212 TOP1MTQ969P6 601 aa8.83□□□□□ -1
USP4-210ENST00000483212 ZNF689Q96CS4 500 aaPredicted RBP8.83□□□□□ -1
USP4-210ENST00000483212 ZNF560Q96MR9 790 aa8.83□□□□□ -1
USP4-210ENST00000483212 UROC1Q96N76 676 aa8.83□□□□□ -1
USP4-210ENST00000483212 TWNKQ96RR1 684 aa8.83□□□□□ -1
USP4-210ENST00000483212 FAM124BQ9H5Z6 455 aaPredicted RBP8.83□□□□□ -1
USP4-210ENST00000483212 HAUS4Q9H6D7 363 aa8.83□□□□□ -1
USP4-210ENST00000483212 NHEJ1Q9H9Q4 299 aaPredicted RBP8.83□□□□□ -1
USP4-210ENST00000483212 ACP6Q9NPH0 428 aa8.83□□□□□ -1
USP4-210ENST00000483212 KCND1Q9NSA2 647 aa8.83□□□□□ -1
USP4-210ENST00000483212 CISHQ9NSE2 258 aa8.83□□□□□ -1
USP4-210ENST00000483212 ZNHIT6Q9NWK9 470 aaKnown RBP8.83□□□□□ -1
USP4-210ENST00000483212 NXF1Q9UBU9 619 aaKnown RBP8.83□□□□□ -1
USP4-210ENST00000483212 HMGXB4Q9UGU5 601 aa8.83□□□□□ -1
USP4-210ENST00000483212 REXO2Q9Y3B8 237 aaKnown RBP8.83□□□□□ -1
USP4-210ENST00000483212 PCDHB7Q9Y5E2 793 aa8.83□□□□□ -1
USP4-210ENST00000483212 TSC2P49815 1807 aa8.82□□□□□ -1
USP4-210ENST00000483212 PTPRSQ13332 1948 aa8.82□□□□□ -1
USP4-210ENST00000483212 KPNA7A9QM74 516 aa8.82□□□□□ -1
USP4-210ENST00000483212 EIF3CLB5ME19 914 aaKnown RBP8.82□□□□□ -1
USP4-210ENST00000483212 F8W810 466 aa8.82□□□□□ -1
USP4-210ENST00000483212 TMEM189-UBE2V1I3L0A0 370 aa8.82□□□□□ -1
USP4-210ENST00000483212 DDX3XO00571 662 aaKnown RBP eCLIP8.82□□□□□ -1
USP4-210ENST00000483212 HOXA2O43364 376 aa8.82□□□□□ -1
USP4-210ENST00000483212 EFCAB14O75071 495 aa8.82□□□□□ -1
USP4-210ENST00000483212 CILPO75339 1184 aa8.82□□□□□ -1
USP4-210ENST00000483212 TACC1O75410 805 aa8.82□□□□□ -1
USP4-210ENST00000483212 NDUFA10O95299 355 aa8.82□□□□□ -1
USP4-210ENST00000483212 CALCAP01258 141 aa8.82□□□□□ -1
USP4-210ENST00000483212 CYP11B1P15538 503 aa8.82□□□□□ -1
USP4-210ENST00000483212 CHRNB2P17787 502 aa8.82□□□□□ -1
USP4-210ENST00000483212 ANXA13P27216 316 aa8.82□□□□□ -1
USP4-210ENST00000483212 CDH8P55286 799 aa8.82□□□□□ -1
USP4-210ENST00000483212 ARID5AQ03989 594 aa8.82□□□□□ -1
USP4-210ENST00000483212 FPGSQ05932 587 aa8.82□□□□□ -1
USP4-210ENST00000483212 PPIGQ13427 754 aaKnown RBP eCLIP8.82□□□□□ -1
USP4-210ENST00000483212 SV2CQ496J9 727 aa8.82□□□□□ -1
USP4-210ENST00000483212 NOP9Q86U38 636 aaKnown RBP8.82□□□□□ -1
USP4-210ENST00000483212 SLC47A2Q86VL8 602 aa8.82□□□□□ -1
USP4-210ENST00000483212 ZSCAN30Q86W11 494 aa8.82□□□□□ -1
USP4-210ENST00000483212 FMNL3Q8IVF7 1028 aa8.82□□□□□ -1
USP4-210ENST00000483212 CCDC170Q8IYT3 715 aa8.82□□□□□ -1
USP4-210ENST00000483212 RBBP8NLQ8NC74 664 aaPredicted RBP8.82□□□□□ -1
USP4-210ENST00000483212 URGCPQ8TCY9 931 aa8.82□□□□□ -1
USP4-210ENST00000483212 SLC20A1Q8WUM9 679 aa8.82□□□□□ -1
USP4-210ENST00000483212 RABGGTAQ92696 567 aa8.82□□□□□ -1
USP4-210ENST00000483212 DDX27Q96GQ7 796 aaKnown RBP8.82□□□□□ -1
USP4-210ENST00000483212 EIF3CQ99613 913 aaKnown RBP8.82□□□□□ -1
USP4-210ENST00000483212 ZSWIM1Q9BR11 485 aa8.82□□□□□ -1
USP4-210ENST00000483212 MRPL45Q9BRJ2 306 aaKnown RBP8.82□□□□□ -1
USP4-210ENST00000483212 HTATIP2Q9BUP3 242 aa8.82□□□□□ -1
USP4-210ENST00000483212 ELOVL4Q9GZR5 314 aa8.82□□□□□ -1
USP4-210ENST00000483212 NRDE2Q9H7Z3 1164 aa8.82□□□□□ -1
USP4-210ENST00000483212 KANSL3Q9P2N6 904 aa8.82□□□□□ -1
USP4-210ENST00000483212 HCSTQ9UBK5 93 aa8.82□□□□□ -1
USP4-210ENST00000483212 DNAJB4Q9UDY4 337 aa8.82□□□□□ -1
USP4-210ENST00000483212 LRFN2Q9ULH4 789 aa8.82□□□□□ -1
USP4-210ENST00000483212 L1RE1Q9UN81 338 aa8.82□□□□□ -1
USP4-210ENST00000483212 SNX9Q9Y5X1 595 aa8.82□□□□□ -1
USP4-210ENST00000483212 ADGRG1Q9Y653 693 aa8.82□□□□□ -1
USP4-210ENST00000483212 BZW2Q9Y6E2 419 aaKnown RBP8.82□□□□□ -1
USP4-210ENST00000483212 TDRD15B5MCY1 1934 aaKnown RBP8.82□□□□□ -1
USP4-210ENST00000483212 FNDC1Q4ZHG4 1894 aaPredicted RBP8.81□□□□□ -1
USP4-210ENST00000483212 A0A087X0T9 212 aa8.81□□□□□ -1
USP4-210ENST00000483212 M0QZQ0 153 aa8.81□□□□□ -1
USP4-210ENST00000483212 GABRDO14764 452 aa8.81□□□□□ -1
USP4-210ENST00000483212 KIF4AO95239 1232 aa8.81□□□□□ -1
USP4-210ENST00000483212 EFEMP2O95967 443 aa8.81□□□□□ -1
USP4-210ENST00000483212 AMHP03971 560 aa8.81□□□□□ -1
USP4-210ENST00000483212 ITGB1P05556 798 aa8.81□□□□□ -1
USP4-210ENST00000483212 FAM163BP0C2L3 166 aa8.81□□□□□ -1
USP4-210ENST00000483212 FAM228BP0C875 321 aa8.81□□□□□ -1
USP4-210ENST00000483212 KRT5P13647 590 aa8.81□□□□□ -1
USP4-210ENST00000483212 P4HA1P13674 534 aa8.81□□□□□ -1
USP4-210ENST00000483212 SYN1P17600 705 aa8.81□□□□□ -1
USP4-210ENST00000483212 CD58P19256 250 aa8.81□□□□□ -1
USP4-210ENST00000483212 WARSP23381 471 aaKnown RBP8.81□□□□□ -1
USP4-210ENST00000483212 PAX3P23760 479 aa8.81□□□□□ -1
USP4-210ENST00000483212 KIF11P52732 1056 aa8.81□□□□□ -1
USP4-210ENST00000483212 RAD23BP54727 409 aa8.81□□□□□ -1
USP4-210ENST00000483212 TNNC1P63316 161 aa8.81□□□□□ -1
USP4-210ENST00000483212 FMO1Q01740 532 aa8.81□□□□□ -1
USP4-210ENST00000483212 TSR1Q2NL82 804 aaKnown RBP8.81□□□□□ -1
USP4-210ENST00000483212 TIGD5Q53EQ6 642 aa8.81□□□□□ -1
USP4-210ENST00000483212 TDRD12Q587J7 1177 aaKnown RBP8.81□□□□□ -1
USP4-210ENST00000483212 TMEM240Q5SV17 173 aa8.81□□□□□ -1
USP4-210ENST00000483212 DCLRE1AQ6PJP8 1040 aa8.81□□□□□ -1
USP4-210ENST00000483212 TMEM270Q6UE05 265 aa8.81□□□□□ -1
USP4-210ENST00000483212 ZNF365Q70YC5 407 aa8.81□□□□□ -1
USP4-210ENST00000483212 DPH6Q7L8W6 267 aa8.81□□□□□ -1
USP4-210ENST00000483212 TMCO2Q7Z6W1 182 aaPredicted RBP8.81□□□□□ -1
USP4-210ENST00000483212 OSTM1Q86WC4 334 aa8.81□□□□□ -1
USP4-210ENST00000483212 PALB2Q86YC2 1186 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms