RNA–Protein interactions for RNA: ENST00000476590.1

CD55-208, Transcript of CD55 molecule (Cromer blood group), human

TSL 1 (best)

Gene CD55, Length 2,163 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD55-208	ENST00000476590	FGF18	O76093	207 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	TOMM70	O94826	608 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	SUN1	O94901	812 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	TRIM23	P36406	574 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	IGHMBP2	P38935	993 aa	Known RBP	4.37	□□□□□ -1.71
CD55-208	ENST00000476590	ME1	P48163	572 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	ZNF135	P52742	658 aa	Predicted RBP	4.37	□□□□□ -1.71
CD55-208	ENST00000476590	P2RX3	P56373	397 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	BPIFB3	P59826	476 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	POLR2G	P62487	172 aa	Known RBP eCLIP	4.37	□□□□□ -1.71
CD55-208	ENST00000476590	TMPRSS15	P98073	1019 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	GUCA2A	Q02747	115 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	SLC34A1	Q06495	639 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	NFIA	Q12857	509 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	RAB33A	Q14088	237 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	MORC3	Q14149	939 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	STK38	Q15208	465 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	SF3B3	Q15393	1217 aa	Known RBP	4.37	□□□□□ -1.71
CD55-208	ENST00000476590	SF3B4	Q15427	424 aa	Known RBP eCLIP	4.37	□□□□□ -1.71	2e-7	■■□□□ 12.1
CD55-208	ENST00000476590	CWF19L2	Q2TBE0	894 aa	Known RBP	4.37	□□□□□ -1.71
CD55-208	ENST00000476590	WDR72	Q3MJ13	1102 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	MTERF2	Q49AM1	385 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	CCDC58	Q4VC31	144 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	CLVS2	Q5SYC1	327 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	TPTE2	Q6XPS3	522 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	DCDC5	Q6ZRR9	648 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	NET1	Q7Z628	596 aa	Predicted RBP	4.37	□□□□□ -1.71
CD55-208	ENST00000476590	FSIP1	Q8NA03	581 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	FAM13C	Q8NE31	585 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	PPHLN1	Q8NEY8	458 aa	Known RBP	4.37	□□□□□ -1.71
CD55-208	ENST00000476590	FLAD1	Q8NFF5	587 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	RSAD2	Q8WXG1	361 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	MRPS27	Q92552	414 aa	Known RBP	4.37	□□□□□ -1.71
CD55-208	ENST00000476590	INPP5D	Q92835	1189 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	UTP4	Q969X6	686 aa	Known RBP	4.37	□□□□□ -1.71
CD55-208	ENST00000476590	AIDA	Q96BJ3	306 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	GPRASP2	Q96D09	838 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	PAWR	Q96IZ0	340 aa	Known RBP	4.37	□□□□□ -1.71
CD55-208	ENST00000476590	CAPZA3	Q96KX2	299 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	CCDC138	Q96M89	665 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	MOGAT1	Q96PD6	335 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	NOX5	Q96PH1	765 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	TESK2	Q96S53	571 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	SECISBP2	Q96T21	854 aa	Known RBP	4.37	□□□□□ -1.71
CD55-208	ENST00000476590	ELAC2	Q9BQ52	826 aa	Known RBP	4.37	□□□□□ -1.71
CD55-208	ENST00000476590	ALG1	Q9BT22	464 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	LRRC1	Q9BTT6	524 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	TRIM55	Q9BYV6	548 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	ASPSCR1	Q9BZE9	553 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	LRMDA	Q9H2I8	198 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	CCDC134	Q9H6E4	229 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	TMEM206	Q9H813	350 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	C10orf88	Q9H8K7	445 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	ETNK1	Q9HBU6	452 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	COPRS	Q9NQ92	184 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	TRNAU1AP	Q9NX07	287 aa	Known RBP	4.37	□□□□□ -1.71
CD55-208	ENST00000476590	EHD2	Q9NZN4	543 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	ZNF212	Q9UDV6	495 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	GGT7	Q9UJ14	662 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	TRIM33	Q9UPN9	1127 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	DMTF1	Q9Y222	760 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	APOBEC2	Q9Y235	224 aa	Known RBP	4.37	□□□□□ -1.71
CD55-208	ENST00000476590	ATP11B	Q9Y2G3	1177 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	RBMX2	Q9Y388	322 aa	Known RBP	4.37	□□□□□ -1.71
CD55-208	ENST00000476590	USP15	Q9Y4E8	981 aa	Predicted RBP	4.37	□□□□□ -1.71
CD55-208	ENST00000476590	PCDHGA8	Q9Y5G5	932 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	UMODL1	Q5DID0	1318 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	WDR17	Q8IZU2	1322 aa		4.37	□□□□□ -1.71
CD55-208	ENST00000476590	PTCH1	Q13635	1447 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	ABCC10	Q5T3U5	1492 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590		A0A0U1RQJ8	604 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	CLRN2	A0PK11	232 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	OPHN1	O60890	802 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	UNC5C	O95185	931 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	LARGE1	O95461	756 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	ESRRB	O95718	433 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	OAS1	P00973	400 aa	Known RBP	4.36	□□□□□ -1.71
CD55-208	ENST00000476590	HLA-DRA	P01903	254 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	ATP1A1	P05023	1023 aa	Known RBP	4.36	□□□□□ -1.71
CD55-208	ENST00000476590	SLC3A2	P08195	630 aa	Known RBP	4.36	□□□□□ -1.71
CD55-208	ENST00000476590	CFH	P08603	1231 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	FBXO45	P0C2W1	286 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	ELN	P15502	786 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	VCL	P18206	1134 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	ATF6	P18850	670 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	IL10	P22301	178 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	CASP2	P42575	452 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	MAPKAPK2	P49137	400 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	PLCD1	P51178	756 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	MRPS15	P82914	257 aa	Known RBP	4.36	□□□□□ -1.71
CD55-208	ENST00000476590	REL	Q04864	619 aa	Predicted RBP	4.36	□□□□□ -1.71
CD55-208	ENST00000476590	REST	Q13127	1097 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	TCIRG1	Q13488	830 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	CUL1	Q13616	776 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	GRM2	Q14416	872 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	ANKRD39	Q53RE8	183 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	SPDYA	Q5MJ70	313 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	ARMC4	Q5T2S8	1044 aa		4.36	□□□□□ -1.71
CD55-208	ENST00000476590	RNASEH2B	Q5TBB1	312 aa	Known RBP	4.36	□□□□□ -1.71
CD55-208	ENST00000476590	CYP4A22	Q5TCH4	519 aa		4.36	□□□□□ -1.71

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