RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 NR2E3Q9Y5X4 410 aa14.56□□□□□ -0.08
CCDC88A-211ENST00000471947 BTBD19C9JJ37 291 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 COILP38432 576 aaPredicted RBP14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 ITGA8P53708 1063 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 KRT81Q14533 505 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 CELF3Q5SZQ8 465 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 IER5Q5VY09 327 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 MFSD7Q6UXD7 560 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 SLC17A8Q8NDX2 589 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 HES6Q96HZ4 224 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 CEP41Q9BYV8 373 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 CARD9Q9H257 536 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 PCDH10Q9P2E7 1040 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 RNF8O76064 485 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 IRX4P78413 519 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 P3H1Q32P28 736 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 FMNL3Q8IVF7 1028 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 DNERQ8NFT8 737 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 ACTRT1Q8TDG2 376 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 MED10Q9BTT4 135 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 DHX33Q9H6R0 707 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 RASGRF2O14827 1237 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 TAF5Q15542 800 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 CCDC142Q17RM4 750 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 GLE1Q53GS7 698 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 CASC4Q6P4E1 433 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 EFCAB13Q8IY85 973 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 C2orf69Q8N8R5 385 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 TCP11Q8WWU5 503 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 HPDLQ96IR7 371 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 ATP6V1G3Q96LB4 118 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 NIF3L1Q9GZT8 377 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 CDT1Q9H211 546 aa14.55□□□□□ -0.08
CCDC88A-211ENST00000471947 MIF4GDA9UHW6 222 aaKnown RBP14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 RFC1P35251 1148 aaPredicted RBP14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 ARSEP51690 589 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 C15orf59Q2T9L4 293 aaPredicted RBP14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 IZUMO3Q5VZ72 239 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 CRELD2Q6UXH1 353 aaPredicted RBP14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 RUFY4Q6ZNE9 571 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 UPF1Q92900 1129 aaKnown RBP eCLIP14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 CABS1Q96KC9 395 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 HERPUD2Q9BSE4 406 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 VPS33BQ9H267 617 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 MRPL47Q9HD33 250 aaKnown RBP14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 E2F8A0AVK6 867 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 PHF2O75151 1096 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 DPY19L2P1Q6NXN4 242 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 SCUBE3Q8IX30 993 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 JOSD2Q8TAC2 188 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 CGRRF1Q99675 332 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 WNT8AQ9H1J5 351 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 KIAA1586Q9HCI6 787 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 POLR2AP24928 1970 aaKnown RBP14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 A8MXQ7 604 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 CYP2C9P11712 490 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 MUTP22033 750 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 CHKAP35790 457 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 ADCY2Q08462 1091 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 CUL1Q13616 776 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 PSMD6Q15008 389 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 SH3PXD2AQ5TCZ1 1133 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 ALS2CLQ60I27 953 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 ZDHHC14Q8IZN3 488 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 ABRAQ8N0Z2 381 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 TMC2Q8TDI7 906 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 C18orf25Q96B23 403 aaPredicted RBP14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 FAM167AQ96KS9 214 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 MFSD14AQ96MC6 490 aa14.54□□□□□ -0.08
CCDC88A-211ENST00000471947 A0A0B4J269 797 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 SLC26A4O43511 780 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 CST8O60676 142 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 LYPLA2O95372 231 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 CDH6P55285 790 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 MXD4Q14582 209 aaPredicted RBP14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 XRRA1Q6P2D8 792 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 IPO4Q8TEX9 1081 aaKnown RBP14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 ACAP3Q96P50 834 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 B3GNT5Q9BYG0 378 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 CXCL16Q9H2A7 254 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 GDF3Q9NR23 364 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 MAFBQ9Y5Q3 323 aaPredicted RBP14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 MAD1L1Q9Y6D9 718 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 I3L4J1 428 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 HBP1O60381 514 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 C4BPAP04003 597 aaKnown RBP14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 IVLP07476 585 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 CCL14Q16627 93 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 RHOT1Q8IXI2 618 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 FBXO41Q8TF61 875 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 PPEF2O14830 753 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 GH1P01241 217 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 IQCF3P0C7M6 154 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 ARF4P18085 180 aaPredicted RBP14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 GJA5P36382 358 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 ERFP50548 548 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 EFNA5P52803 228 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 ZNF844Q08AG5 666 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms