RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.88□□□□□ -1.47
PTPN4-209ENST00000469511 DPP7Q9UHL4 492 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 ZNF232Q9UNY5 417 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 COL4A3BPQ9Y5P4 624 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 SLC12A7Q9Y666 1083 aa5.88□□□□□ -1.47
PTPN4-209ENST00000469511 TNRC6BQ9UPQ9 1833 aaKnown RBP5.88□□□□□ -1.47
PTPN4-209ENST00000469511 APC2O95996 2303 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 A0A087WWV3 80 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 WDR27A2RRH5 827 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 ANTXRLA6NF34 631 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 TTLL8A6PVC2 850 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 PATE3B3GLJ2 98 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 MAN2B1O00754 1011 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 SGSM2O43147 1006 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 HYAL3O43820 417 aaPredicted RBP5.87□□□□□ -1.47
PTPN4-209ENST00000469511 GAS7O60861 476 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 NPTXRO95502 500 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 TDP2O95551 362 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 C1RP00736 705 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 ARF4P18085 180 aaPredicted RBP5.87□□□□□ -1.47
PTPN4-209ENST00000469511 HOXA9P31269 272 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 MCM5P33992 734 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 LIFRP42702 1097 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 DNM2P50570 870 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 RAB33AQ14088 237 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 HSP90AA2PQ14568 343 aaPredicted RBP5.87□□□□□ -1.47
PTPN4-209ENST00000469511 C6orf118Q5T5N4 469 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 LRCH2Q5VUJ6 765 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 RNF43Q68DV7 783 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 ELMSAN1Q6PJG2 1045 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 LYSMD3Q7Z3D4 306 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 SRGAP1Q7Z6B7 1085 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 WDR5BQ86VZ2 330 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 SGMS1Q86VZ5 419 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 GPR65Q8IYL9 337 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 ALDH16A1Q8IZ83 802 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 TMEM130Q8N3G9 435 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 RNF149Q8NC42 400 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 ASAP3Q8TDY4 903 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 RSPH1Q8WYR4 309 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 CCDC136Q96JN2 1154 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 ZFYVE19Q96K21 471 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 TMEM87BQ96K49 555 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 ASB16Q96NS5 453 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 CORO1BQ9BR76 489 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 TTPALQ9BTX7 342 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 TRMT61BQ9BVS5 477 aaKnown RBP5.87□□□□□ -1.47
PTPN4-209ENST00000469511 TEKT3Q9BXF9 490 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 ZMYND12Q9H0C1 365 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 CSRNP2Q9H175 543 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 ZFP14Q9HCL3 533 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 XPNPEP1Q9NQW7 623 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 ZDHHC3Q9NYG2 299 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 STK39Q9UEW8 545 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 PARP2Q9UGN5 583 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 TCEAL9Q9UHQ7 104 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 KLK13Q9UKR3 277 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 KCNH3Q9ULD8 1083 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 INVSQ9Y283 1065 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 MRPS17Q9Y2R5 130 aaKnown RBP5.87□□□□□ -1.47
PTPN4-209ENST00000469511 GPC6Q9Y625 555 aaPredicted RBP5.87□□□□□ -1.47
PTPN4-209ENST00000469511 CDY1Q9Y6F8 540 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 NUP210Q8TEM1 1887 aaPredicted RBP5.87□□□□□ -1.47
PTPN4-209ENST00000469511 PTPRBP23467 1997 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 MAST4O15021 2626 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 LAMA1P25391 3075 aa5.87□□□□□ -1.47
PTPN4-209ENST00000469511 SMG1Q96Q15 3661 aaKnown RBP5.87□□□□□ -1.47
PTPN4-209ENST00000469511 BPTFQ12830 3046 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 URB1O60287 2271 aaKnown RBP5.86□□□□□ -1.47
PTPN4-209ENST00000469511 MYO18AQ92614 2054 aaKnown RBP5.86□□□□□ -1.47
PTPN4-209ENST00000469511 MYOFQ9NZM1 2061 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 HELZP42694 1942 aaKnown RBP5.86□□□□□ -1.47
PTPN4-209ENST00000469511 HEPACAM2A8MVW5 462 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 CDX4O14627 284 aaPredicted RBP5.86□□□□□ -1.47
PTPN4-209ENST00000469511 TNFRSF10BO14763 440 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 SLC27A2O14975 620 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 DTNBO60941 627 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 XYLBO75191 536 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 FAM13AO94988 1023 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 PAPSS2O95340 614 aaPredicted RBP5.86□□□□□ -1.47
PTPN4-209ENST00000469511 EDN1P05305 212 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 PSMC3P17980 439 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 TKTP29401 623 aaKnown RBP5.86□□□□□ -1.47
PTPN4-209ENST00000469511 CNR2P34972 360 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 MPLP40238 635 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 BRCC3P46736 316 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 PLA2G4AP47712 749 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 RBM25P49756 843 aaKnown RBP5.86□□□□□ -1.47
PTPN4-209ENST00000469511 JAK3P52333 1124 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 SETQ01105 290 aaPredicted RBP5.86□□□□□ -1.47
PTPN4-209ENST00000469511 MBTD1Q05BQ5 628 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 PON2Q15165 354 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 PFKFB3Q16875 520 aaPredicted RBP5.86□□□□□ -1.47
PTPN4-209ENST00000469511 STXBP5Q5T5C0 1151 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 TTC22Q5TAA0 569 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 NAIF1Q69YI7 327 aaPredicted RBP5.86□□□□□ -1.47
PTPN4-209ENST00000469511 FERMT3Q86UX7 667 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 TMTC2Q8N394 836 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 C3orf58Q8NDZ4 430 aa5.86□□□□□ -1.47
PTPN4-209ENST00000469511 DEFB124Q8NES8 71 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms