RNA–Protein interactions for RNA: ENST00000462135.1

STX1A-206, Transcript of syntaxin 1A, human

TSL 3

Gene STX1A, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
STX1A-206	ENST00000462135	SOX4	Q06945	474 aa	Predicted RBP	12.84	□□□□□ -0.35
STX1A-206	ENST00000462135	KIF5A	Q12840	1032 aa		12.84	□□□□□ -0.35
STX1A-206	ENST00000462135	IKBKE	Q14164	716 aa		12.84	□□□□□ -0.35
STX1A-206	ENST00000462135	ARHGAP29	Q52LW3	1261 aa		12.84	□□□□□ -0.35
STX1A-206	ENST00000462135	NOMO2	Q5JPE7	1267 aa		12.84	□□□□□ -0.35
STX1A-206	ENST00000462135	ALKBH5	Q6P6C2	394 aa	Known RBP	12.84	□□□□□ -0.35
STX1A-206	ENST00000462135	KIAA1328	Q86T90	577 aa		12.84	□□□□□ -0.35
STX1A-206	ENST00000462135	NOP9	Q86U38	636 aa	Known RBP	12.84	□□□□□ -0.35
STX1A-206	ENST00000462135	SLC47A2	Q86VL8	602 aa		12.84	□□□□□ -0.35
STX1A-206	ENST00000462135	RPUSD2	Q8IZ73	545 aa	Known RBP	12.84	□□□□□ -0.35
STX1A-206	ENST00000462135	ACRBP	Q8NEB7	543 aa		12.84	□□□□□ -0.35
STX1A-206	ENST00000462135	OLIG1	Q8TAK6	271 aa		12.84	□□□□□ -0.35
STX1A-206	ENST00000462135	LPP	Q93052	612 aa		12.84	□□□□□ -0.35
STX1A-206	ENST00000462135	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	12.84	□□□□□ -0.35
STX1A-206	ENST00000462135	MRPL9	Q9BYD2	267 aa	Known RBP	12.84	□□□□□ -0.35
STX1A-206	ENST00000462135	CARNS1	A5YM72	827 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	USP27X	A6NNY8	438 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	TMEM189-UBE2V1	I3L0A0	370 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	MED7	O43513	233 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	HUS1	O60921	280 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	GNA15	P30679	374 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	ARHGAP25	P42331	645 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	DSC1	Q08554	894 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	STIL	Q15468	1287 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	UPP1	Q16831	310 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	SCARA3	Q6AZY7	606 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	MFSD5	Q6N075	450 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	GLYCTK	Q8IVS8	523 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	TMEM86A	Q8N2M4	240 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	TMEM199	Q8N511	208 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	RNF10	Q8N5U6	811 aa	Known RBP	12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	RNF169	Q8NCN4	708 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	LNX1	Q8TBB1	728 aa	Predicted RBP	12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	UBE2Q2	Q8WVN8	375 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	PPP1R12C	Q9BZL4	782 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	ZNF518B	Q9C0D4	1074 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	ISCU	Q9H1K1	167 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	12.83	□□□□□ -0.36	9e-9	■■■■■ 111.8
STX1A-206	ENST00000462135	TRMT1	Q9NXH9	659 aa	Known RBP	12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	PCDHGC3	Q9UN70	934 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	POLI	Q9UNA4	740 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	PCDHB7	Q9Y5E2	793 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135	SNX9	Q9Y5X1	595 aa		12.83	□□□□□ -0.36
STX1A-206	ENST00000462135		A0A0A6YYK5	440 aa	Predicted RBP	12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	PODXL	O00592	558 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	RTN2	O75298	545 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	BAIAP3	O94812	1187 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	H2AFZ	P0C0S5	128 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	WEE2	P0C1S8	567 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	CHRNB2	P17787	502 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	WARS	P23381	471 aa	Known RBP	12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	CCL23	P55773	120 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	FMO1	Q01740	532 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	CYP27A1	Q02318	531 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	TCEAL1	Q15170	157 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	PTPN14	Q15678	1187 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	CLLU1OS	Q5K130	101 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	CCDC122	Q5T0U0	273 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	DCLRE1A	Q6PJP8	1040 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	H2AFV	Q71UI9	128 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	ABI1	Q8IZP0	508 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	C17orf53	Q8N3J3	647 aa	Predicted RBP	12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	APPL2	Q8NEU8	664 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	SLC20A1	Q8WUM9	679 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	TRIM11	Q96F44	468 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	SCLY	Q96I15	445 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	MMS19	Q96T76	1030 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	NT5C1A	Q9BXI3	368 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	SDCBP2	Q9H190	292 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	SMYD3	Q9H7B4	428 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	RNF19A	Q9NV58	838 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	MIOS	Q9NXC5	875 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	DSE	Q9UL01	958 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	LRFN2	Q9ULH4	789 aa		12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	KIAA0100	Q14667	2235 aa	Known RBP	12.82	□□□□□ -0.36
STX1A-206	ENST00000462135	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	ANKRD62	A6NC57	917 aa		12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	PPEF2	O14830	753 aa		12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	KIF5C	O60282	957 aa		12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	CYP1A1	P04798	512 aa	Predicted RBP	12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	TMEM253	P0C7T8	217 aa		12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	MYBL1	P10243	752 aa		12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	VDR	P11473	427 aa		12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	RAG1	P15918	1043 aa		12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	CD58	P19256	250 aa		12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	CDH5	P33151	784 aa	Predicted RBP	12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	RAD23B	P54727	409 aa		12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	ETF1	P62495	437 aa	Known RBP	12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	IFI16	Q16666	785 aa	Known RBP	12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	CLEC16A	Q2KHT3	1053 aa		12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	SOWAHA	Q2M3V2	549 aa		12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	SCARA5	Q6ZMJ2	495 aa		12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	CRYBG2	Q8N1P7	616 aa		12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	WHAMM	Q8TF30	809 aa		12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	ZNF606	Q8WXB4	792 aa		12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	TMEM176A	Q96HP8	235 aa		12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	VCPIP1	Q96JH7	1222 aa		12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	TMEM175	Q9BSA9	504 aa		12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	LHX5	Q9H2C1	402 aa		12.81	□□□□□ -0.36
STX1A-206	ENST00000462135	TRIM43B	A6NCK2	446 aa		12.8	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms