RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 TRPV2Q9Y5S1 764 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 CASTOR2A6NHX0 329 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 TISP43B9A030 160 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 MSCO60682 206 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 GPD1P21695 349 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 AXLP30530 894 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 SERPINB6P35237 376 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 EIF3BP55884 814 aaKnown RBP7.81□□□□□ -1.16
SYNE1-213ENST00000448038 ALS2CLQ60I27 953 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 CCDC62Q6P9F0 684 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 MICALL1Q8N3F8 863 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 SLC7A14Q8TBB6 771 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 LRRC8CQ8TDW0 803 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 HASPINQ8TF76 798 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 TATDN2Q93075 761 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 SLC35C1Q96A29 364 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 AAASQ9NRG9 546 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.81□□□□□ -1.16
SYNE1-213ENST00000448038 TLK1Q9UKI8 766 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 A0A0G2JLL6 359 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-213ENST00000448038 DFFAO00273 331 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 GSTA1P08263 222 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 GSTA2P09210 222 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 PMLP29590 882 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 FLT3LGP49771 235 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 GABPB1Q06547 395 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-213ENST00000448038 SNX17Q15036 470 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 UGCGQ16739 394 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 FBXO47Q5MNV8 452 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 NOL9Q5SY16 702 aaKnown RBP7.8□□□□□ -1.16
SYNE1-213ENST00000448038 PRRT2Q7Z6L0 340 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-213ENST00000448038 NDUFAF2Q8N183 169 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 PARD3BQ8TEW8 1205 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 IFT43Q96FT9 208 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 GOLPH3Q9H4A6 298 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 ASB7Q9H672 318 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 TMEM134Q9H6X4 195 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 UBN1Q9NPG3 1134 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 VAV3Q9UKW4 847 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 ITGA11Q9UKX5 1188 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 PPP1R12AO14974 1030 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-213ENST00000448038 KLRC4O43908 158 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 FKTNO75072 461 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 MAFO75444 373 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-213ENST00000448038 AP1G2O75843 785 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 POMCP01189 267 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 SMIM10L2AP0DMW4 78 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 SMIM10L2BP0DMW5 78 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 RAB27AP51159 221 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 KIAA1755Q5JYT7 1200 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 BRSK2Q8IWQ3 736 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 GDAP1Q8TB36 358 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 C7orf43Q8WVR3 580 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 DDX50Q9BQ39 737 aaKnown RBP7.8□□□□□ -1.16
SYNE1-213ENST00000448038 CYP3A43Q9HB55 503 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 PFDN4Q9NQP4 134 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 FARP2O94887 1054 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-213ENST00000448038 NNMTP40261 264 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 ALDH1A3P47895 512 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 IL9RQ01113 521 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 C2CD6Q53TS8 623 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 PID1Q7Z2X4 250 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 GSPT2Q8IYD1 628 aaKnown RBP7.8□□□□□ -1.16
SYNE1-213ENST00000448038 NKX2-3Q8TAU0 364 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 CYFIP2Q96F07 1278 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 C4BP0C0L5 1744 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 PKD1L3Q7Z443 1732 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 AP5Z1O43299 807 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 CABYRO75952 493 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 NCAM1P13591 858 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 PRKAR2AP13861 404 aaKnown RBP7.8□□□□□ -1.16
SYNE1-213ENST00000448038 NFKBIAP25963 317 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 DHX34Q14147 1143 aaKnown RBP7.8□□□□□ -1.16
SYNE1-213ENST00000448038 PSMD6Q15008 389 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 ECM1Q16610 540 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 TTC19Q6DKK2 380 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-213ENST00000448038 ITPRIPL1Q6GPH6 555 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 SLC47A2Q86VL8 602 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 GANCQ8TET4 914 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 L3MBTL3Q96JM7 780 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-213ENST00000448038 C12orf42Q96LP6 360 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 SLITRK1Q96PX8 696 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 GMLQ99445 158 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 LACTBL1A8MY62 500 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 ACO1P21399 889 aaKnown RBP7.8□□□□□ -1.16
SYNE1-213ENST00000448038 ARSEP51690 589 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 GTF2BQ00403 316 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 ATL2Q8NHH9 583 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 CLEC4DQ8WXI8 215 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 COL20A1Q9P218 1284 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 KLHL14Q9P2G3 628 aa7.8□□□□□ -1.16
SYNE1-213ENST00000448038 NOVA2Q9UNW9 492 aaKnown RBP7.8□□□□□ -1.16
SYNE1-213ENST00000448038 LAMB4A4D0S4 1761 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 NID2Q14112 1375 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 GMNNO75496 209 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 RAG1P15918 1043 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 PAMP19021 973 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 NNTQ13423 1086 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 SMTNL2Q2TAL5 461 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 ANO5Q75V66 913 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms