RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 CLK3P49761 638 aaKnown RBP5.62□□□□□ -1.51
CLK1-203ENST00000409769 PTTG1IPP53801 180 aa5.62□□□□□ -1.51
CLK1-203ENST00000409769 MPP3Q13368 585 aa5.62□□□□□ -1.51
CLK1-203ENST00000409769 ODF1Q14990 250 aa5.62□□□□□ -1.51
CLK1-203ENST00000409769 ACAP2Q15057 778 aa5.62□□□□□ -1.51
CLK1-203ENST00000409769 NOMO1Q15155 1222 aa5.62□□□□□ -1.51
CLK1-203ENST00000409769 SPDYE7PQ495Y7 208 aa5.62□□□□□ -1.51
CLK1-203ENST00000409769 MFSD14BQ5SR56 506 aa5.62□□□□□ -1.51
CLK1-203ENST00000409769 PQLC1Q8N2U9 271 aa5.62□□□□□ -1.51
CLK1-203ENST00000409769 OR2I1PQ8NGU4 316 aa5.62□□□□□ -1.51
CLK1-203ENST00000409769 MDM1Q8TC05 714 aa5.62□□□□□ -1.51
CLK1-203ENST00000409769 NRG4Q8WWG1 115 aa5.62□□□□□ -1.51
CLK1-203ENST00000409769 COA7Q96BR5 231 aa5.62□□□□□ -1.51
CLK1-203ENST00000409769 CEP95Q96GE4 821 aa5.62□□□□□ -1.51
CLK1-203ENST00000409769 RNF181Q9P0P0 153 aa5.62□□□□□ -1.51
CLK1-203ENST00000409769 ARID4BQ4LE39 1312 aaPredicted RBP5.62□□□□□ -1.51
CLK1-203ENST00000409769 KDM5AP29375 1690 aaKnown RBP5.62□□□□□ -1.51
CLK1-203ENST00000409769 PPLO60437 1756 aa5.62□□□□□ -1.51
CLK1-203ENST00000409769 SETD1BQ9UPS6 1966 aaKnown RBP5.62□□□□□ -1.51
CLK1-203ENST00000409769 E2F8A0AVK6 867 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 TMEM131LA2VDJ0 1609 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 ZNF185O15231 689 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 TEX33O43247 280 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 ADCY6O43306 1168 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 ALDH1L1O75891 902 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 CDKL5O76039 1030 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 ZRANB2O95218 330 aaKnown RBP eCLIP5.61□□□□□ -1.51
CLK1-203ENST00000409769 FOSP01100 380 aaPredicted RBP5.61□□□□□ -1.51
CLK1-203ENST00000409769 SNRPA1P09661 255 aaKnown RBP5.61□□□□□ -1.51
CLK1-203ENST00000409769 CDK4P11802 303 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 CCND1P24385 295 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 CXCR5P32302 372 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 CLRN1P58418 232 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 CSRP2Q16527 193 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 COLEC12Q5KU26 742 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 ZKSCAN2Q63HK3 967 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 ANKS6Q68DC2 871 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 OTUD7BQ6GQQ9 843 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 ZBTB46Q86UZ6 589 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 ANKRD13AQ8IZ07 590 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 CPA6Q8N4T0 437 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 CAGE1Q8TC20 777 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 HDAC10Q969S8 669 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 NUP88Q99567 741 aaPredicted RBP5.61□□□□□ -1.51
CLK1-203ENST00000409769 SMAD5Q99717 465 aaKnown RBP5.61□□□□□ -1.51
CLK1-203ENST00000409769 ADAM2Q99965 735 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 C7orf25Q9BPX7 421 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 REXO4Q9GZR2 422 aaKnown RBP5.61□□□□□ -1.51
CLK1-203ENST00000409769 MOCS1Q9NZB8 636 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 DNM3Q9UQ16 869 aa5.61□□□□□ -1.51
CLK1-203ENST00000409769 USP15Q9Y4E8 981 aaPredicted RBP5.61□□□□□ -1.51
CLK1-203ENST00000409769 UHRF1BP1Q6BDS2 1440 aa5.6□□□□□ -1.51
CLK1-203ENST00000409769 TONSLQ96HA7 1378 aa5.6□□□□□ -1.51
CLK1-203ENST00000409769 SPATA31A6Q5VVP1 1343 aa5.6□□□□□ -1.51
CLK1-203ENST00000409769 CXorf49A8MYA2 514 aaPredicted RBP5.6□□□□□ -1.51
CLK1-203ENST00000409769 HTRA2O43464 458 aaPredicted RBP5.6□□□□□ -1.51
CLK1-203ENST00000409769 SNUPNO95149 360 aaKnown RBP5.6□□□□□ -1.51
CLK1-203ENST00000409769 C1RP00736 705 aa5.6□□□□□ -1.51
CLK1-203ENST00000409769 CFIP05156 583 aa5.6□□□□□ -1.51
CLK1-203ENST00000409769 VCAM1P19320 739 aa5.6□□□□□ -1.51
CLK1-203ENST00000409769 EDNRBP24530 442 aa5.6□□□□□ -1.51
CLK1-203ENST00000409769 ATXN1P54253 815 aaKnown RBP5.6□□□□□ -1.51
CLK1-203ENST00000409769 ATP8B2P98198 1209 aa5.6□□□□□ -1.51
CLK1-203ENST00000409769 MCL1Q07820 350 aa5.6□□□□□ -1.51
CLK1-203ENST00000409769 RESTQ13127 1097 aa5.6□□□□□ -1.51
CLK1-203ENST00000409769 HNRNPA0Q13151 305 aaKnown RBP5.6□□□□□ -1.51
CLK1-203ENST00000409769 ATXN7L2Q5T6C5 722 aaPredicted RBP5.6□□□□□ -1.51
CLK1-203ENST00000409769 AGAP9Q5VTM2 703 aa5.6□□□□□ -1.51
CLK1-203ENST00000409769 RHOT2Q8IXI1 618 aa5.6□□□□□ -1.51
CLK1-203ENST00000409769 REPS2Q8NFH8 660 aa5.6□□□□□ -1.51
CLK1-203ENST00000409769 TMEM140Q9NV12 185 aa5.6□□□□□ -1.51
CLK1-203ENST00000409769 UBR1Q8IWV7 1749 aa5.6□□□□□ -1.51
CLK1-203ENST00000409769 MYO3AQ8NEV4 1616 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 MAST3O60307 1309 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 ABLIM3O94929 683 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 SPDEFO95238 335 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 PTPN7P35236 360 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 EPHB1P54762 984 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 PER3P56645 1201 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 CDC42EP1Q00587 391 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 FOXI1Q12951 378 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 MTM1Q13496 603 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 TP53BP2Q13625 1128 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 TTF1Q15361 905 aaPredicted RBP5.59□□□□□ -1.51
CLK1-203ENST00000409769 RRP12Q5JTH9 1297 aaKnown RBP5.59□□□□□ -1.51
CLK1-203ENST00000409769 METRNLQ641Q3 311 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 FBXO42Q6P3S6 717 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 SEM1Q6ZVN7 128 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 MIGA2Q7L4E1 593 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 DRC7Q8IY82 874 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 PPM1NQ8N819 430 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 RNF169Q8NCN4 708 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 SIMC1Q8NDZ2 872 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 UHRF1Q96T88 793 aaPredicted RBP5.59□□□□□ -1.51
CLK1-203ENST00000409769 R3HDMLQ9H3Y0 253 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.59□□□□□ -1.51
CLK1-203ENST00000409769 INTUQ9ULD6 942 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 LIMCH1Q9UPQ0 1083 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 NOX1Q9Y5S8 564 aa5.59□□□□□ -1.51
CLK1-203ENST00000409769 CFAP20Q9Y6A4 193 aaKnown RBP5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms