RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 DARS2Q6PI48 645 aaKnown RBP12.57□□□□□ -0.4
HMGB1-206ENST00000405805 C1orf186Q6ZWK4 172 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 SV2AQ7L0J3 742 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 KCTD6Q8NC69 237 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 INO80BQ9C086 356 aaPredicted RBP12.57□□□□□ -0.4
HMGB1-206ENST00000405805 FAM198AQ9UFP1 575 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 MYH15Q9Y2K3 1946 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 TOM1L1O75674 476 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 ZBTB7AO95365 584 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 TTC4O95801 387 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 ARL1P40616 181 aaPredicted RBP12.57□□□□□ -0.4
HMGB1-206ENST00000405805 NME8Q8N427 588 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 BBOF1Q8ND07 529 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 FAM161BQ96MY7 647 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 PHTF1Q9UMS5 762 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 NUP188Q5SRE5 1749 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 A0A0A6YYK5 440 aaPredicted RBP12.57□□□□□ -0.4
HMGB1-206ENST00000405805 CCDC189A1A4V9 331 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 DDX3YO15523 660 aaKnown RBP12.57□□□□□ -0.4
HMGB1-206ENST00000405805 HOXD13P35453 343 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 FNTAP49354 379 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 BPIFB4P59827 614 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 DGKZQ13574 1117 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 PPP6R3Q5H9R7 873 aaPredicted RBP12.57□□□□□ -0.4
HMGB1-206ENST00000405805 ISLR2Q6UXK2 745 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 PDIK1LQ8N165 341 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 AGR3Q8TD06 166 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 EPS8L1Q8TE68 723 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 MKNK1Q9BUB5 465 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 OLFML3Q9NRN5 406 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 GTF3C4Q9UKN8 822 aa12.57□□□□□ -0.4
HMGB1-206ENST00000405805 EIF3DO15371 548 aaKnown RBP eCLIP12.56□□□□□ -0.4
HMGB1-206ENST00000405805 GRAP2O75791 330 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 EPHB1P54762 984 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 DOT1LQ8TEK3 1739 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 TAAR1Q96RJ0 339 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 GORASP1Q9BQQ3 440 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 NGRNQ9NPE2 291 aaKnown RBP12.56□□□□□ -0.4
HMGB1-206ENST00000405805 TOGARAM1Q9Y4F4 1720 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 SMAPO00193 183 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 NVLO15381 856 aaKnown RBP12.56□□□□□ -0.4
HMGB1-206ENST00000405805 AHCYL1O43865 530 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 GJA8P48165 433 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 TMPRSS15P98073 1019 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 KRT81Q14533 505 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 C3orf62Q6ZUJ4 267 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 ARHGAP27Q6ZUM4 889 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 TRIM50Q86XT4 487 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 KIAA2013Q8IYS2 634 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 CCT6BQ92526 530 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 GLIS2Q9BZE0 524 aaPredicted RBP12.56□□□□□ -0.4
HMGB1-206ENST00000405805 SIX2Q9NPC8 291 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 R3HDM2Q9Y2K5 976 aaKnown RBP12.56□□□□□ -0.4
HMGB1-206ENST00000405805 TJP3O95049 919 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 GCLCP48506 637 aaPredicted RBP12.56□□□□□ -0.4
HMGB1-206ENST00000405805 PLCB4Q15147 1175 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 PKN2Q16513 984 aaKnown RBP12.56□□□□□ -0.4
HMGB1-206ENST00000405805 C16orf87Q6PH81 154 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 YTHDF3Q7Z739 585 aaKnown RBP12.56□□□□□ -0.4
HMGB1-206ENST00000405805 PAGR1Q9BTK6 254 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 CYP4F11Q9HBI6 524 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 SEPT10Q9P0V9 454 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 AGAP1Q9UPQ3 857 aa12.56□□□□□ -0.4
HMGB1-206ENST00000405805 HLA-DRAP01903 254 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 PYGBP11216 843 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 EPHB2P29323 1055 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 PSMC1P62191 440 aaKnown RBP12.55□□□□□ -0.4
HMGB1-206ENST00000405805 SPP2Q13103 211 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 KIF22Q14807 665 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 DACT2Q5SW24 774 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 NUDCD3Q8IVD9 361 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 SLC7A3Q8WY07 619 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 PGM2Q96G03 612 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 MOV10L1Q9BXT6 1211 aaKnown RBP12.55□□□□□ -0.4
HMGB1-206ENST00000405805 TRIM55Q9BYV6 548 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 NINJ2Q9NZG7 142 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 NWD2Q9ULI1 1742 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 ITGB4P16144 1822 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 HAUS5O94927 633 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 SSTR1P30872 391 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 RRP1BQ14684 758 aaKnown RBP12.55□□□□□ -0.4
HMGB1-206ENST00000405805 MTDHQ86UE4 582 aaKnown RBP12.55□□□□□ -0.4
HMGB1-206ENST00000405805 LRRN4Q8WUT4 740 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 NLRP4Q96MN2 994 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 TARS2Q9BW92 718 aaKnown RBP12.55□□□□□ -0.4
HMGB1-206ENST00000405805 RBAKQ9NYW8 714 aaPredicted RBP12.55□□□□□ -0.4
HMGB1-206ENST00000405805 UVRAGQ9P2Y5 699 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 WDR64B1ANS9 1081 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 KDM1AO60341 852 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 ADRB2P07550 413 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 ETS2P15036 469 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 HOXA7P31268 230 aaPredicted RBP12.55□□□□□ -0.4
HMGB1-206ENST00000405805 ARFIP2P53365 341 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 GABPAQ06546 454 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 HADHQ16836 314 aaKnown RBP12.55□□□□□ -0.4
HMGB1-206ENST00000405805 ANKRD20A2Q5SQ80 823 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 ANKRD20A1Q5TYW2 823 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 PCNX4Q63HM2 1172 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 C1orf228Q6PIY5 440 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 C15orf52Q6ZUT6 534 aaKnown RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms