RNA–Protein interactions for RNA: ENST00000401607.6

CPNE1-205, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 1,795 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-205ENST00000401607 WHAMMQ8TF30 809 aa27.34■■□□□ 1.97
CPNE1-205ENST00000401607 SMIM28A0A1B0GU29 152 aa27.33■■□□□ 1.97
CPNE1-205ENST00000401607 P4HA1P13674 534 aa27.33■■□□□ 1.97
CPNE1-205ENST00000401607 KCNE1P15382 129 aa27.33■■□□□ 1.97
CPNE1-205ENST00000401607 DNA2P51530 1060 aa27.33■■□□□ 1.97
CPNE1-205ENST00000401607 NFX1Q12986 1120 aaKnown RBP27.33■■□□□ 1.97
CPNE1-205ENST00000401607 PTK7Q13308 1070 aa27.33■■□□□ 1.97
CPNE1-205ENST00000401607 RPS6KA1Q15418 735 aa27.33■■□□□ 1.97
CPNE1-205ENST00000401607 TRIM71Q2Q1W2 868 aaKnown RBP27.33■■□□□ 1.97
CPNE1-205ENST00000401607 PEX26Q7Z412 305 aa27.33■■□□□ 1.97
CPNE1-205ENST00000401607 TFAP2BQ92481 460 aa27.33■■□□□ 1.97
CPNE1-205ENST00000401607 CALR3Q96L12 384 aaKnown RBP27.33■■□□□ 1.97
CPNE1-205ENST00000401607 TSEN34Q9BSV6 310 aaKnown RBP27.33■■□□□ 1.97
CPNE1-205ENST00000401607 AGO3Q9H9G7 860 aaKnown RBP27.33■■□□□ 1.97
CPNE1-205ENST00000401607 UBQLN1Q9UMX0 589 aaKnown RBP27.33■■□□□ 1.97
CPNE1-205ENST00000401607 NSFP46459 744 aaKnown RBP27.32■■□□□ 1.96
CPNE1-205ENST00000401607 MON1BQ7L1V2 547 aa27.32■■□□□ 1.96
CPNE1-205ENST00000401607 GLT1D1Q96MS3 346 aa27.32■■□□□ 1.96
CPNE1-205ENST00000401607 CNOT8Q9UFF9 292 aaKnown RBP27.32■■□□□ 1.96
CPNE1-205ENST00000401607 CILPO75339 1184 aa27.32■■□□□ 1.96
CPNE1-205ENST00000401607 RAD23BP54727 409 aa27.32■■□□□ 1.96
CPNE1-205ENST00000401607 CAGE1Q8TC20 777 aa27.32■■□□□ 1.96
CPNE1-205ENST00000401607 TWNKQ96RR1 684 aa27.32■■□□□ 1.96
CPNE1-205ENST00000401607 NUP85Q9BW27 656 aa27.32■■□□□ 1.96
CPNE1-205ENST00000401607 CHST12Q9NRB3 414 aa27.32■■□□□ 1.96
CPNE1-205ENST00000401607 HMGXB4Q9UGU5 601 aa27.32■■□□□ 1.96
CPNE1-205ENST00000401607 TRIM17Q9Y577 477 aa27.32■■□□□ 1.96
CPNE1-205ENST00000401607 FBXO47Q5MNV8 452 aa27.31■■□□□ 1.96
CPNE1-205ENST00000401607 ZNF572Q7Z3I7 529 aaPredicted RBP27.31■■□□□ 1.96
CPNE1-205ENST00000401607 RABGGTAQ92696 567 aa27.31■■□□□ 1.96
CPNE1-205ENST00000401607 TSPAN18Q96SJ8 248 aa27.31■■□□□ 1.96
CPNE1-205ENST00000401607 ERVK-5Q9HDB9 667 aa27.31■■□□□ 1.96
CPNE1-205ENST00000401607 PAEPP09466 180 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 TNNC1P63316 161 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 MYO1EQ12965 1108 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 C9orf57Q5W0N0 161 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 C11orf63Q6NUN7 778 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 PHF13Q86YI8 300 aaPredicted RBP27.3■■□□□ 1.96
CPNE1-205ENST00000401607 LRRC52Q8N7C0 313 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 NOA1Q8NC60 698 aaKnown RBP27.3■■□□□ 1.96
CPNE1-205ENST00000401607 ZNF564Q8TBZ8 553 aaPredicted RBP27.3■■□□□ 1.96
CPNE1-205ENST00000401607 HES6Q96HZ4 224 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 ELOVL4Q9GZR5 314 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 EPC1Q9H2F5 836 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 AVENQ9NQS1 362 aaPredicted RBP27.3■■□□□ 1.96
CPNE1-205ENST00000401607 FAM105AQ9NUU6 356 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 EHD2Q9NZN4 543 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 UVRAGQ9P2Y5 699 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 AMFRQ9UKV5 643 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 PCDHGC3Q9UN70 934 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 NOD1Q9Y239 953 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 GPR182O15218 404 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 MYBL1P10243 752 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 ZSCAN20P17040 1043 aaPredicted RBP27.3■■□□□ 1.96
CPNE1-205ENST00000401607 INCA1Q0VD86 236 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 SLC4A11Q8NBS3 891 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 TRIM11Q96F44 468 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 SMARCAL1Q9NZC9 954 aa27.3■■□□□ 1.96
CPNE1-205ENST00000401607 SCN1AP35498 2009 aa27.29■■□□□ 1.96
CPNE1-205ENST00000401607 A0A1W2PQ45 241 aaPredicted RBP27.29■■□□□ 1.96
CPNE1-205ENST00000401607 A0A1W2PQY0 241 aa27.29■■□□□ 1.96
CPNE1-205ENST00000401607 RRM1P23921 792 aa27.29■■□□□ 1.96
CPNE1-205ENST00000401607 PTP4A2Q12974 167 aa27.29■■□□□ 1.96
CPNE1-205ENST00000401607 ORC1Q13415 861 aa27.29■■□□□ 1.96
CPNE1-205ENST00000401607 C2CD6Q53TS8 623 aa27.29■■□□□ 1.96
CPNE1-205ENST00000401607 FAM26DQ5JW98 314 aa27.29■■□□□ 1.96
CPNE1-205ENST00000401607 MS4A14Q96JA4 679 aa27.29■■□□□ 1.96
CPNE1-205ENST00000401607 RPGRIP1Q96KN7 1286 aa27.29■■□□□ 1.96
CPNE1-205ENST00000401607 C11orf70Q9BRQ4 267 aa27.29■■□□□ 1.96
CPNE1-205ENST00000401607 FAM124BQ9H5Z6 455 aaPredicted RBP27.29■■□□□ 1.96
CPNE1-205ENST00000401607 PADI3Q9ULW8 664 aa27.29■■□□□ 1.96
CPNE1-205ENST00000401607 TLR3O15455 904 aaKnown RBP27.28■■□□□ 1.96
CPNE1-205ENST00000401607 LSM8O95777 96 aaKnown RBP27.28■■□□□ 1.96
CPNE1-205ENST00000401607 GHRP10912 638 aa27.28■■□□□ 1.96
CPNE1-205ENST00000401607 CD52P31358 61 aa27.28■■□□□ 1.96
CPNE1-205ENST00000401607 SOX4Q06945 474 aaPredicted RBP27.28■■□□□ 1.96
CPNE1-205ENST00000401607 SLC43A3Q8NBI5 491 aa27.28■■□□□ 1.96
CPNE1-205ENST00000401607 SH3TC2Q8TF17 1288 aa27.28■■□□□ 1.96
CPNE1-205ENST00000401607 MEIS3P2A8K0S8 358 aa27.27■■□□□ 1.96
CPNE1-205ENST00000401607 PIRO00625 290 aa27.27■■□□□ 1.96
CPNE1-205ENST00000401607 CES2O00748 559 aa27.27■■□□□ 1.96
CPNE1-205ENST00000401607 KCNK3O14649 394 aa27.27■■□□□ 1.96
CPNE1-205ENST00000401607 PTGESO14684 152 aa27.27■■□□□ 1.96
CPNE1-205ENST00000401607 CD4P01730 458 aa27.27■■□□□ 1.96
CPNE1-205ENST00000401607 CD19P15391 556 aa27.27■■□□□ 1.96
CPNE1-205ENST00000401607 CDH5P33151 784 aaPredicted RBP27.27■■□□□ 1.96
CPNE1-205ENST00000401607 LPIN1Q14693 890 aa27.27■■□□□ 1.96
CPNE1-205ENST00000401607 PPP1R2P3Q6NXS1 205 aa27.27■■□□□ 1.96
CPNE1-205ENST00000401607 LLGL2Q6P1M3 1020 aa27.27■■□□□ 1.96
CPNE1-205ENST00000401607 TMEM176AQ96HP8 235 aa27.27■■□□□ 1.96
CPNE1-205ENST00000401607 VCPIP1Q96JH7 1222 aa27.27■■□□□ 1.96
CPNE1-205ENST00000401607 XRN2Q9H0D6 950 aaKnown RBP eCLIP27.27■■□□□ 1.966e-9■□□□□ 10.4
CPNE1-205ENST00000401607 ADAM22Q9P0K1 906 aa27.27■■□□□ 1.96
CPNE1-205ENST00000401607 BARX2Q9UMQ3 279 aaPredicted RBP27.27■■□□□ 1.96
CPNE1-205ENST00000401607 ALG6Q9Y672 507 aa27.27■■□□□ 1.96
CPNE1-205ENST00000401607 XPOTO43592 962 aaKnown RBP27.27■■□□□ 1.96
CPNE1-205ENST00000401607 TUBB4BP68371 445 aa27.27■■□□□ 1.96
CPNE1-205ENST00000401607 MMS22LQ6ZRQ5 1243 aa27.27■■□□□ 1.96
CPNE1-205ENST00000401607 WDTC1Q8N5D0 677 aa27.27■■□□□ 1.96
CPNE1-205ENST00000401607 GPR161Q8N6U8 529 aaKnown RBP27.27■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms