RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 RBBP6Q7Z6E9 1792 aaKnown RBP22.18■■□□□ 1.14
CTCF-202ENST00000401394 TCRBV7S3A2A0A539 114 aa22.18■■□□□ 1.14
CTCF-202ENST00000401394 TESPA1A2RU30 521 aaPredicted RBP22.18■■□□□ 1.14
CTCF-202ENST00000401394 TNNI1P19237 187 aa22.18■■□□□ 1.14
CTCF-202ENST00000401394 GPX6P59796 221 aa22.18■■□□□ 1.14
CTCF-202ENST00000401394 GRIK3Q13003 919 aa22.18■■□□□ 1.14
CTCF-202ENST00000401394 MTMR1Q13613 665 aa22.18■■□□□ 1.14
CTCF-202ENST00000401394 EAPPQ56P03 285 aaPredicted RBP22.18■■□□□ 1.14
CTCF-202ENST00000401394 NLRP9Q7RTR0 991 aa22.18■■□□□ 1.14
CTCF-202ENST00000401394 ZNF75CPQ92670 426 aaPredicted RBP22.18■■□□□ 1.14
CTCF-202ENST00000401394 KIFAP3Q92845 792 aa22.18■■□□□ 1.14
CTCF-202ENST00000401394 ZCWPW1Q9H0M4 648 aa22.18■■□□□ 1.14
CTCF-202ENST00000401394 AGO4Q9HCK5 861 aaKnown RBP22.18■■□□□ 1.14
CTCF-202ENST00000401394 KCND2Q9NZV8 630 aa22.18■■□□□ 1.14
CTCF-202ENST00000401394 OGDHQ02218 1023 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 STAT4Q14765 748 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 MDH1BQ5I0G3 518 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 MON1BQ7L1V2 547 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 CCDC125Q86Z20 511 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 CCDC89Q8N998 374 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 STK32AQ8WU08 396 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 WDR83Q9BRX9 315 aaKnown RBP22.17■■□□□ 1.14
CTCF-202ENST00000401394 PLVAPQ9BX97 442 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 TMEM39BQ9GZU3 492 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 RANBP17Q9H2T7 1088 aaKnown RBP22.17■■□□□ 1.14
CTCF-202ENST00000401394 KMT5AQ9NQR1 393 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 ARL8BQ9NVJ2 186 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 CYP39A1Q9NYL5 469 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 USH1CQ9Y6N9 552 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 NFX1Q12986 1120 aaKnown RBP22.17■■□□□ 1.14
CTCF-202ENST00000401394 ALCAMQ13740 583 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 CC2D2BQ6DHV5 1058 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 SMC6Q96SB8 1091 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 TXLNGQ9NUQ3 528 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 ARMCX1Q9P291 453 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 CTCFP49711 727 aaPredicted RBP22.17■■□□□ 1.14
CTCF-202ENST00000401394 YARSP54577 528 aaKnown RBP22.17■■□□□ 1.14
CTCF-202ENST00000401394 NLRP11P59045 1033 aaKnown RBP22.17■■□□□ 1.14
CTCF-202ENST00000401394 SPARCL1Q14515 664 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 CCNG2Q16589 344 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 FNBP1LQ5T0N5 605 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 HHATQ5VTY9 493 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 ZCCHC9Q8N567 271 aaKnown RBP22.17■■□□□ 1.14
CTCF-202ENST00000401394 GRK7Q8WTQ7 553 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 MASTLQ96GX5 879 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 CCDC77Q9BR77 488 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 TMX2Q9Y320 296 aa22.17■■□□□ 1.14
CTCF-202ENST00000401394 ZBTB12Q9Y330 459 aaPredicted RBP22.17■■□□□ 1.14
CTCF-202ENST00000401394 MRPL11Q9Y3B7 192 aaKnown RBP22.17■■□□□ 1.14
CTCF-202ENST00000401394 MAPK13O15264 365 aa22.16■■□□□ 1.14
CTCF-202ENST00000401394 KRT36O76013 467 aa22.16■■□□□ 1.14
CTCF-202ENST00000401394 ZNF252P-AS1Q0IIN9 211 aa22.16■■□□□ 1.14
CTCF-202ENST00000401394 NRG4Q8WWG1 115 aa22.16■■□□□ 1.14
CTCF-202ENST00000401394 TJP2Q9UDY2 1190 aa22.16■■□□□ 1.14
CTCF-202ENST00000401394 STARD13Q9Y3M8 1113 aa22.16■■□□□ 1.14
CTCF-202ENST00000401394 ZNF536O15090 1300 aa22.16■■□□□ 1.14
CTCF-202ENST00000401394 LIASO43766 372 aa22.16■■□□□ 1.14
CTCF-202ENST00000401394 TDRD10Q5VZ19 366 aaKnown RBP22.16■■□□□ 1.14
CTCF-202ENST00000401394 ZNF395Q9H8N7 513 aaPredicted RBP22.16■■□□□ 1.14
CTCF-202ENST00000401394 ZFATQ9P243 1243 aa22.16■■□□□ 1.14
CTCF-202ENST00000401394 ZFP69BQ9UJL9 534 aa22.16■■□□□ 1.14
CTCF-202ENST00000401394 SBDSQ9Y3A5 250 aaKnown RBP eCLIP22.16■■□□□ 1.14
CTCF-202ENST00000401394 TCEA3O75764 348 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 ATP4AP20648 1035 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 RNF220Q5VTB9 566 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 TAS1R3Q7RTX0 852 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 FBXO27Q8NI29 283 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 SHKBP1Q8TBC3 707 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 RIT2Q99578 217 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 CADM1Q9BY67 442 aaKnown RBP22.15■■□□□ 1.14
CTCF-202ENST00000401394 COQ4Q9Y3A0 265 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 PCDHB4Q9Y5E5 795 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 ZNF541Q9H0D2 1346 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 SGK1O00141 431 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 KRT1P04264 644 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 CHRNA5P30532 468 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 NCKAP1LP55160 1127 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 ACVR2BQ13705 512 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 CYP4A22Q5TCH4 519 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 RHOT1Q8IXI2 618 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 TCP10LQ8TDR4 215 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 WDR60Q8WVS4 1066 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 CLUHO75153 1309 aa22.15■■□□□ 1.14
CTCF-202ENST00000401394 KLRG2A4D1S0 409 aaPredicted RBP22.14■■□□□ 1.14
CTCF-202ENST00000401394 ZNF862O60290 1169 aa22.14■■□□□ 1.14
CTCF-202ENST00000401394 HLA-DRAP01903 254 aa22.14■■□□□ 1.14
CTCF-202ENST00000401394 MYBPC2Q14324 1141 aa22.14■■□□□ 1.14
CTCF-202ENST00000401394 PDK4Q16654 411 aa22.14■■□□□ 1.14
CTCF-202ENST00000401394 HAPLN2Q9GZV7 340 aa22.14■■□□□ 1.14
CTCF-202ENST00000401394 C1orf112Q9NSG2 853 aa22.14■■□□□ 1.14
CTCF-202ENST00000401394 TYROBPO43914 113 aa22.14■■□□□ 1.13
CTCF-202ENST00000401394 INHBEP58166 350 aa22.14■■□□□ 1.13
CTCF-202ENST00000401394 NR1H3Q13133 447 aa22.14■■□□□ 1.13
CTCF-202ENST00000401394 PODNQ7Z5L7 613 aa22.14■■□□□ 1.13
CTCF-202ENST00000401394 C12orf56Q8IXR9 622 aa22.14■■□□□ 1.13
CTCF-202ENST00000401394 MCEEQ96PE7 176 aa22.14■■□□□ 1.13
CTCF-202ENST00000401394 RAB3IPQ96QF0 476 aaPredicted RBP22.14■■□□□ 1.13
CTCF-202ENST00000401394 LY75O60449 1722 aa22.14■■□□□ 1.13
CTCF-202ENST00000401394 C10orf71Q711Q0 1435 aa22.14■■□□□ 1.13
CTCF-202ENST00000401394 A6NHS1 94 aa22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms