RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 GPR179Q6PRD1 2367 aa30.97■■■□□ 2.55
HMGB1-205ENST00000399494 NPHP3-ACAD11A0A0J9YXS1 232 aa30.96■■■□□ 2.55
HMGB1-205ENST00000399494 VIPR2P41587 438 aa30.96■■■□□ 2.55
HMGB1-205ENST00000399494 ARSHQ5FYA8 562 aa30.96■■■□□ 2.55
HMGB1-205ENST00000399494 GPBP1Q86WP2 473 aa30.96■■■□□ 2.55
HMGB1-205ENST00000399494 LARP4BQ92615 738 aaKnown RBP30.96■■■□□ 2.55
HMGB1-205ENST00000399494 ASAH2Q9NR71 780 aa30.96■■■□□ 2.55
HMGB1-205ENST00000399494 NDRG2Q9UN36 371 aaKnown RBP30.96■■■□□ 2.55
HMGB1-205ENST00000399494 DNAH14Q0VDD8 3507 aa30.96■■■□□ 2.55
HMGB1-205ENST00000399494 CUTAO60888 179 aa30.95■■■□□ 2.55
HMGB1-205ENST00000399494 CYP3A5P20815 502 aa30.95■■■□□ 2.55
HMGB1-205ENST00000399494 GDI1P31150 447 aa30.95■■■□□ 2.55
HMGB1-205ENST00000399494 MATR3P43243 847 aaKnown RBP eCLIP30.95■■■□□ 2.55
HMGB1-205ENST00000399494 AARSP49588 968 aaKnown RBP eCLIP30.95■■■□□ 2.55
HMGB1-205ENST00000399494 NCKAP1LP55160 1127 aa30.95■■■□□ 2.55
HMGB1-205ENST00000399494 YWHAHQ04917 246 aaPredicted RBP30.95■■■□□ 2.55
HMGB1-205ENST00000399494 MCM6Q14566 821 aa30.95■■■□□ 2.55
HMGB1-205ENST00000399494 RRAGBQ5VZM2 374 aa30.95■■■□□ 2.55
HMGB1-205ENST00000399494 MAMSTRQ6ZN01 415 aa30.95■■■□□ 2.55
HMGB1-205ENST00000399494 KIF12Q96FN5 646 aa30.95■■■□□ 2.55
HMGB1-205ENST00000399494 OXCT2Q9BYC2 517 aaPredicted RBP30.95■■■□□ 2.55
HMGB1-205ENST00000399494 EPC1Q9H2F5 836 aa30.95■■■□□ 2.55
HMGB1-205ENST00000399494 BLOC1S4Q9NUP1 217 aa30.95■■■□□ 2.55
HMGB1-205ENST00000399494 NCDNQ9UBB6 729 aa30.95■■■□□ 2.55
HMGB1-205ENST00000399494 MED19A0JLT2 244 aaPredicted RBP30.94■■■□□ 2.54
HMGB1-205ENST00000399494 KRT18P05783 430 aaKnown RBP30.94■■■□□ 2.54
HMGB1-205ENST00000399494 TNFSF9P41273 254 aa30.94■■■□□ 2.54
HMGB1-205ENST00000399494 ME1P48163 572 aa30.94■■■□□ 2.54
HMGB1-205ENST00000399494 CACNB1Q02641 598 aaPredicted RBP30.94■■■□□ 2.54
HMGB1-205ENST00000399494 HAUS6Q7Z4H7 955 aa30.94■■■□□ 2.54
HMGB1-205ENST00000399494 MFSD6LQ8IWD5 586 aa30.94■■■□□ 2.54
HMGB1-205ENST00000399494 ZSCAN18Q8TBC5 510 aaPredicted RBP30.94■■■□□ 2.54
HMGB1-205ENST00000399494 KCNN1Q92952 543 aa30.94■■■□□ 2.54
HMGB1-205ENST00000399494 LRRC3Q9BY71 257 aa30.94■■■□□ 2.54
HMGB1-205ENST00000399494 CHRDQ9H2X0 955 aa30.94■■■□□ 2.54
HMGB1-205ENST00000399494 LARSQ9P2J5 1176 aaKnown RBP30.94■■■□□ 2.54
HMGB1-205ENST00000399494 STK17AQ9UEE5 414 aa30.94■■■□□ 2.54
HMGB1-205ENST00000399494 UBQLN1Q9UMX0 589 aaKnown RBP30.94■■■□□ 2.54
HMGB1-205ENST00000399494 LACTBL1A8MY62 500 aa30.93■■■□□ 2.54
HMGB1-205ENST00000399494 OR4Q2P0C623 313 aa30.93■■■□□ 2.54
HMGB1-205ENST00000399494 KRT85P78386 507 aa30.93■■■□□ 2.54
HMGB1-205ENST00000399494 TEAD2Q15562 447 aa30.93■■■□□ 2.54
HMGB1-205ENST00000399494 SHKBP1Q8TBC3 707 aa30.93■■■□□ 2.54
HMGB1-205ENST00000399494 LRRC15Q8TF66 581 aa30.93■■■□□ 2.54
HMGB1-205ENST00000399494 DEPDC1BQ8WUY9 529 aa30.93■■■□□ 2.54
HMGB1-205ENST00000399494 FAM3CQ92520 227 aa30.93■■■□□ 2.54
HMGB1-205ENST00000399494 FAM126AQ9BYI3 521 aaPredicted RBP30.93■■■□□ 2.54
HMGB1-205ENST00000399494 GPR88Q9GZN0 384 aa30.93■■■□□ 2.54
HMGB1-205ENST00000399494 YIPF1Q9Y548 306 aa30.93■■■□□ 2.54
HMGB1-205ENST00000399494 NCANO14594 1321 aa30.93■■■□□ 2.54
HMGB1-205ENST00000399494 H0YCG3 227 aa30.92■■■□□ 2.54
HMGB1-205ENST00000399494 ADRB2P07550 413 aa30.92■■■□□ 2.54
HMGB1-205ENST00000399494 DDIT3P35638 169 aa30.92■■■□□ 2.54
HMGB1-205ENST00000399494 CCDC73Q6ZRK6 1079 aa30.92■■■□□ 2.54
HMGB1-205ENST00000399494 BICD1Q96G01 975 aa30.92■■■□□ 2.54
HMGB1-205ENST00000399494 CRISPLD1Q9H336 500 aa30.92■■■□□ 2.54
HMGB1-205ENST00000399494 LMAN1LQ9HAT1 526 aa30.92■■■□□ 2.54
HMGB1-205ENST00000399494 SMG5Q9UPR3 1016 aaKnown RBP30.92■■■□□ 2.54
HMGB1-205ENST00000399494 GTF3C5Q9Y5Q8 519 aaPredicted RBP30.92■■■□□ 2.54
HMGB1-205ENST00000399494 COL4A2P08572 1712 aa30.92■■■□□ 2.54
HMGB1-205ENST00000399494 ZNF263O14978 683 aa30.91■■■□□ 2.54
HMGB1-205ENST00000399494 FAM189A1O60320 539 aa30.91■■■□□ 2.54
HMGB1-205ENST00000399494 TDGF1P13385 188 aa30.91■■■□□ 2.54
HMGB1-205ENST00000399494 STAT6P42226 847 aa30.91■■■□□ 2.54
HMGB1-205ENST00000399494 DUSP4Q13115 394 aa30.91■■■□□ 2.54
HMGB1-205ENST00000399494 GPR17Q13304 367 aa30.91■■■□□ 2.54
HMGB1-205ENST00000399494 RSPO4Q2I0M5 234 aaPredicted RBP30.91■■■□□ 2.54
HMGB1-205ENST00000399494 GPR161Q8N6U8 529 aaKnown RBP30.91■■■□□ 2.54
HMGB1-205ENST00000399494 PGLYRP2Q96PD5 576 aa30.91■■■□□ 2.54
HMGB1-205ENST00000399494 PANK2Q9BZ23 570 aa30.91■■■□□ 2.54
HMGB1-205ENST00000399494 DNAJC25Q9H1X3 360 aa30.91■■■□□ 2.54
HMGB1-205ENST00000399494 PIAS3Q9Y6X2 628 aa30.91■■■□□ 2.54
HMGB1-205ENST00000399494 HEPACAM2A8MVW5 462 aa30.9■■■□□ 2.54
HMGB1-205ENST00000399494 ARNTLO00327 626 aa30.9■■■□□ 2.54
HMGB1-205ENST00000399494 GUCY2FP51841 1108 aa30.9■■■□□ 2.54
HMGB1-205ENST00000399494 PPP2R3AQ06190 1150 aa30.9■■■□□ 2.54
HMGB1-205ENST00000399494 ENOX2Q16206 610 aaKnown RBP30.9■■■□□ 2.54
HMGB1-205ENST00000399494 KYAT1Q16773 422 aa30.9■■■□□ 2.54
HMGB1-205ENST00000399494 DSTYKQ6XUX3 929 aa30.9■■■□□ 2.54
HMGB1-205ENST00000399494 USP37Q86T82 979 aa30.9■■■□□ 2.54
HMGB1-205ENST00000399494 TMC8Q8IU68 726 aa30.9■■■□□ 2.54
HMGB1-205ENST00000399494 PDILTQ8N807 584 aa30.9■■■□□ 2.54
HMGB1-205ENST00000399494 E2F7Q96AV8 911 aa30.9■■■□□ 2.54
HMGB1-205ENST00000399494 RSPRY1Q96DX4 576 aa30.9■■■□□ 2.54
HMGB1-205ENST00000399494 ODF2LQ9ULJ1 636 aa30.9■■■□□ 2.54
HMGB1-205ENST00000399494 TBX20Q9UMR3 447 aa30.9■■■□□ 2.54
HMGB1-205ENST00000399494 CEP250Q9BV73 2442 aa30.9■■■□□ 2.54
HMGB1-205ENST00000399494 F5P12259 2224 aa30.9■■■□□ 2.54
HMGB1-205ENST00000399494 OR6C75A6NL08 312 aa30.89■■■□□ 2.54
HMGB1-205ENST00000399494 MLLT6P55198 1093 aaPredicted RBP30.89■■■□□ 2.54
HMGB1-205ENST00000399494 NUCB2P80303 420 aa30.89■■■□□ 2.54
HMGB1-205ENST00000399494 CENPPQ6IPU0 288 aa30.89■■■□□ 2.54
HMGB1-205ENST00000399494 TSPAN18Q96SJ8 248 aa30.89■■■□□ 2.54
HMGB1-205ENST00000399494 REEP2Q9BRK0 252 aa30.89■■■□□ 2.54
HMGB1-205ENST00000399494 IER2Q9BTL4 223 aa30.89■■■□□ 2.54
HMGB1-205ENST00000399494 A0A1W2PRU2 124 aa30.88■■■□□ 2.53
HMGB1-205ENST00000399494 PPEF2O14830 753 aa30.88■■■□□ 2.53
HMGB1-205ENST00000399494 OGTO15294 1046 aa30.88■■■□□ 2.53
HMGB1-205ENST00000399494 FAM13AO94988 1023 aa30.88■■■□□ 2.53
HMGB1-205ENST00000399494 PIGRP01833 764 aa30.88■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms