RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 PLEKHA7Q6IQ23 1121 aa26.81■■□□□ 1.88
SHOX2-201ENST00000389589 NME8Q8N427 588 aa26.81■■□□□ 1.88
SHOX2-201ENST00000389589 CCDC26Q8TAB7 109 aa26.81■■□□□ 1.88
SHOX2-201ENST00000389589 DNAJB3Q8WWF6 145 aa26.81■■□□□ 1.88
SHOX2-201ENST00000389589 CDHR5Q9HBB8 845 aa26.81■■□□□ 1.88
SHOX2-201ENST00000389589 DPP3Q9NY33 737 aa26.81■■□□□ 1.88
SHOX2-201ENST00000389589 CEP83Q9Y592 693 aa26.81■■□□□ 1.88
SHOX2-201ENST00000389589 SART1O43290 800 aaKnown RBP26.81■■□□□ 1.88
SHOX2-201ENST00000389589 MED7O43513 233 aa26.81■■□□□ 1.88
SHOX2-201ENST00000389589 CALB1P05937 261 aa26.81■■□□□ 1.88
SHOX2-201ENST00000389589 MMP8P22894 467 aa26.81■■□□□ 1.88
SHOX2-201ENST00000389589 CDH5P33151 784 aaPredicted RBP26.81■■□□□ 1.88
SHOX2-201ENST00000389589 TNNT3P45378 269 aaPredicted RBP26.81■■□□□ 1.88
SHOX2-201ENST00000389589 PURAQ00577 322 aaKnown RBP26.81■■□□□ 1.88
SHOX2-201ENST00000389589 HIC1Q14526 733 aa26.81■■□□□ 1.88
SHOX2-201ENST00000389589 ZNF394Q53GI3 561 aa26.81■■□□□ 1.88
SHOX2-201ENST00000389589 MMS22LQ6ZRQ5 1243 aa26.81■■□□□ 1.88
SHOX2-201ENST00000389589 UBXN6Q9BZV1 441 aa26.81■■□□□ 1.88
SHOX2-201ENST00000389589 EPB41L5Q9HCM4 733 aa26.81■■□□□ 1.88
SHOX2-201ENST00000389589 TREHO43280 583 aa26.8■■□□□ 1.88
SHOX2-201ENST00000389589 ALDH1A1P00352 501 aa26.8■■□□□ 1.88
SHOX2-201ENST00000389589 POLR2BP30876 1174 aaKnown RBP26.8■■□□□ 1.88
SHOX2-201ENST00000389589 RWDD2BP57060 319 aa26.8■■□□□ 1.88
SHOX2-201ENST00000389589 GUCY2DQ02846 1103 aa26.8■■□□□ 1.88
SHOX2-201ENST00000389589 ZNF211Q13398 564 aaPredicted RBP26.8■■□□□ 1.88
SHOX2-201ENST00000389589 MFSD14CQ5VZR4 134 aa26.8■■□□□ 1.88
SHOX2-201ENST00000389589 EMBQ6PCB8 327 aa26.8■■□□□ 1.88
SHOX2-201ENST00000389589 MAATS1Q7Z4T9 603 aa26.8■■□□□ 1.88
SHOX2-201ENST00000389589 KIF12Q96FN5 646 aa26.8■■□□□ 1.88
SHOX2-201ENST00000389589 HPDLQ96IR7 371 aa26.8■■□□□ 1.88
SHOX2-201ENST00000389589 PLVAPQ9BX97 442 aa26.8■■□□□ 1.88
SHOX2-201ENST00000389589 PARVAQ9NVD7 372 aa26.8■■□□□ 1.88
SHOX2-201ENST00000389589 AGAP1Q9UPQ3 857 aa26.8■■□□□ 1.88
SHOX2-201ENST00000389589 PDCD11Q14690 1871 aaKnown RBP26.8■■□□□ 1.88
SHOX2-201ENST00000389589 ITGA4P13612 1032 aa26.8■■□□□ 1.88
SHOX2-201ENST00000389589 HOXC8P31273 242 aa26.8■■□□□ 1.88
SHOX2-201ENST00000389589 MARCKSL1P49006 195 aa26.8■■□□□ 1.88
SHOX2-201ENST00000389589 YARSP54577 528 aaKnown RBP26.8■■□□□ 1.88
SHOX2-201ENST00000389589 TTC39CQ8N584 583 aa26.8■■□□□ 1.88
SHOX2-201ENST00000389589 C7orf31Q8N865 590 aa26.8■■□□□ 1.88
SHOX2-201ENST00000389589 DDX47Q9H0S4 455 aaKnown RBP26.8■■□□□ 1.88
SHOX2-201ENST00000389589 SSTR3P32745 418 aaPredicted RBP26.79■■□□□ 1.88
SHOX2-201ENST00000389589 MAMLD1Q13495 774 aa26.79■■□□□ 1.88
SHOX2-201ENST00000389589 SMC1AQ14683 1233 aaKnown RBP26.79■■□□□ 1.88
SHOX2-201ENST00000389589 GSPT2Q8IYD1 628 aaKnown RBP26.79■■□□□ 1.88
SHOX2-201ENST00000389589 EIF1ADQ8N9N8 165 aaKnown RBP26.79■■□□□ 1.88
SHOX2-201ENST00000389589 PPP1R13LQ8WUF5 828 aa26.79■■□□□ 1.88
SHOX2-201ENST00000389589 HINFPQ9BQA5 517 aa26.79■■□□□ 1.88
SHOX2-201ENST00000389589 LCMT1Q9UIC8 334 aa26.79■■□□□ 1.88
SHOX2-201ENST00000389589 PSMC4P43686 418 aa26.78■■□□□ 1.88
SHOX2-201ENST00000389589 PAK2Q13177 524 aa26.78■■□□□ 1.88
SHOX2-201ENST00000389589 TRPV1Q8NER1 839 aa26.78■■□□□ 1.88
SHOX2-201ENST00000389589 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP26.78■■□□□ 1.88
SHOX2-201ENST00000389589 PROSCO94903 275 aa26.78■■□□□ 1.88
SHOX2-201ENST00000389589 RAP1GAPP47736 663 aa26.78■■□□□ 1.88
SHOX2-201ENST00000389589 GJA9P57773 515 aa26.78■■□□□ 1.88
SHOX2-201ENST00000389589 SNX17Q15036 470 aa26.78■■□□□ 1.88
SHOX2-201ENST00000389589 TFAP2BQ92481 460 aa26.78■■□□□ 1.88
SHOX2-201ENST00000389589 SNX27Q96L92 541 aa26.78■■□□□ 1.88
SHOX2-201ENST00000389589 LHX5Q9H2C1 402 aa26.78■■□□□ 1.88
SHOX2-201ENST00000389589 SNTG2Q9NY99 539 aa26.78■■□□□ 1.88
SHOX2-201ENST00000389589 CYBAP13498 195 aa26.77■■□□□ 1.88
SHOX2-201ENST00000389589 CRYBB1P53674 252 aaPredicted RBP26.77■■□□□ 1.88
SHOX2-201ENST00000389589 RAD23BP54727 409 aa26.77■■□□□ 1.88
SHOX2-201ENST00000389589 C2CD6Q53TS8 623 aa26.77■■□□□ 1.88
SHOX2-201ENST00000389589 TRIM6Q9C030 488 aaPredicted RBP26.77■■□□□ 1.88
SHOX2-201ENST00000389589 SDCBP2Q9H190 292 aa26.77■■□□□ 1.88
SHOX2-201ENST00000389589 SMYD3Q9H7B4 428 aa26.77■■□□□ 1.88
SHOX2-201ENST00000389589 SBDSQ9Y3A5 250 aaKnown RBP eCLIP26.77■■□□□ 1.88
SHOX2-201ENST00000389589 CASP8AP2Q9UKL3 1982 aa26.77■■□□□ 1.88
SHOX2-201ENST00000389589 TMEM88BA6NKF7 163 aa26.77■■□□□ 1.88
SHOX2-201ENST00000389589 CILPO75339 1184 aa26.77■■□□□ 1.88
SHOX2-201ENST00000389589 C6orf222P0C671 652 aaPredicted RBP26.77■■□□□ 1.88
SHOX2-201ENST00000389589 CD19P15391 556 aa26.77■■□□□ 1.88
SHOX2-201ENST00000389589 NNTQ13423 1086 aa26.77■■□□□ 1.88
SHOX2-201ENST00000389589 PHLDB2Q86SQ0 1253 aa26.77■■□□□ 1.88
SHOX2-201ENST00000389589 C1orf131Q8NDD1 294 aaKnown RBP26.77■■□□□ 1.88
SHOX2-201ENST00000389589 GADD45GIP1Q8TAE8 222 aaPredicted RBP26.77■■□□□ 1.88
SHOX2-201ENST00000389589 CAVIN3Q969G5 261 aa26.77■■□□□ 1.88
SHOX2-201ENST00000389589 ZIC5Q96T25 663 aa26.77■■□□□ 1.88
SHOX2-201ENST00000389589 MTG1Q9BT17 334 aaPredicted RBP26.77■■□□□ 1.88
SHOX2-201ENST00000389589 EIF2AQ9BY44 585 aaKnown RBP26.77■■□□□ 1.88
SHOX2-201ENST00000389589 SCN10AQ9Y5Y9 1956 aa26.76■■□□□ 1.87
SHOX2-201ENST00000389589 PYGMP11217 842 aa26.76■■□□□ 1.87
SHOX2-201ENST00000389589 CDH8P55286 799 aa26.76■■□□□ 1.87
SHOX2-201ENST00000389589 ZNF200P98182 395 aaPredicted RBP26.76■■□□□ 1.87
SHOX2-201ENST00000389589 MYO1EQ12965 1108 aa26.76■■□□□ 1.87
SHOX2-201ENST00000389589 SMC1BQ8NDV3 1235 aa26.76■■□□□ 1.87
SHOX2-201ENST00000389589 FEZF2Q8TBJ5 459 aa26.76■■□□□ 1.87
SHOX2-201ENST00000389589 SLTMQ9NWH9 1034 aaKnown RBP eCLIP26.76■■□□□ 1.87
SHOX2-201ENST00000389589 CUL1Q13616 776 aa26.75■■□□□ 1.87
SHOX2-201ENST00000389589 LLGL2Q6P1M3 1020 aa26.75■■□□□ 1.87
SHOX2-201ENST00000389589 TAF2Q6P1X5 1199 aa26.75■■□□□ 1.87
SHOX2-201ENST00000389589 CPNE8Q86YQ8 564 aa26.75■■□□□ 1.87
SHOX2-201ENST00000389589 CASKIN2Q8WXE0 1202 aa26.75■■□□□ 1.87
SHOX2-201ENST00000389589 TRIM7Q9C029 511 aa26.75■■□□□ 1.87
SHOX2-201ENST00000389589 SPC25Q9HBM1 224 aa26.75■■□□□ 1.87
SHOX2-201ENST00000389589 BHMG1C9JSJ3 638 aaPredicted RBP26.75■■□□□ 1.87
SHOX2-201ENST00000389589 TLR3O15455 904 aaKnown RBP26.75■■□□□ 1.87
SHOX2-201ENST00000389589 MAN1A1P33908 653 aa26.75■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms