RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 DDX20Q9UHI6 824 aaKnown RBP14.21□□□□□ -0.14
CCDC3-202ENST00000378839 POLIQ9UNA4 740 aa14.21□□□□□ -0.14
CCDC3-202ENST00000378839 TMEM191CA6NGB0 347 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 PRKCBP05771 671 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 TMEM191BP0C7N4 346 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 PSMC4P43686 418 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 MMP13P45452 471 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 RAP1GAPP47736 663 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 LIG3P49916 1009 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 LONRF1Q17RB8 773 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 GJC2Q5T442 439 aaPredicted RBP14.2□□□□□ -0.14
CCDC3-202ENST00000378839 CCDC62Q6P9F0 684 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 CCDC50Q8IVM0 306 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 KAT2BQ92831 832 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 MRPL4Q9BYD3 311 aaKnown RBP14.2□□□□□ -0.14
CCDC3-202ENST00000378839 WHRNQ9P202 907 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 CTNNAL1Q9UBT7 734 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 KCNG1Q9UIX4 513 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 DNAJC25-GNG10A0A024R161 153 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 ERLIN2O94905 339 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 ACSL3O95573 720 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 TGFB3P10600 412 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 CHN1P15882 459 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 TBXAS1P24557 533 aaPredicted RBP14.2□□□□□ -0.14
CCDC3-202ENST00000378839 C1QBPQ07021 282 aaKnown RBP14.2□□□□□ -0.14
CCDC3-202ENST00000378839 ORC1Q13415 861 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 CYP4A22Q5TCH4 519 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 THNSL1Q8IYQ7 743 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 KATNAL2Q8IYT4 538 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 ARFGAP2Q8N6H7 521 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 TRIM11Q96F44 468 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 RNPEPQ9H4A4 650 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 ASIC3Q9UHC3 531 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 IVNS1ABPQ9Y6Y0 642 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 SBF1O95248 1867 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 CLCN3P51790 818 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 VCPIP1Q96JH7 1222 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 OSBPL8Q9BZF1 889 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 FHDC1Q9C0D6 1143 aaPredicted RBP14.2□□□□□ -0.14
CCDC3-202ENST00000378839 MTRF1LQ9UGC7 380 aaKnown RBP14.2□□□□□ -0.14
CCDC3-202ENST00000378839 PARP2Q9UGN5 583 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 CSADQ9Y600 493 aa14.2□□□□□ -0.14
CCDC3-202ENST00000378839 DICER1Q9UPY3 1922 aaKnown RBP14.2□□□□□ -0.14
CCDC3-202ENST00000378839 ANK1P16157 1881 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 PSTPIP1O43586 416 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 CETPP11597 493 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 TFAMQ00059 246 aaKnown RBP14.19□□□□□ -0.14
CCDC3-202ENST00000378839 PPP1R15BQ5SWA1 713 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 ERMARDQ5T6L9 678 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 IER5Q5VY09 327 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 TRIM72Q6ZMU5 477 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 RHOT1Q8IXI2 618 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 MCEEQ96PE7 176 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 OGTO15294 1046 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 ZSCAN5DPP0CG00 497 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 ETS1P14921 441 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 DRD4P21917 467 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 KYNUQ16719 465 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 TTC31Q49AM3 519 aaPredicted RBP14.19□□□□□ -0.14
CCDC3-202ENST00000378839 LIN9Q5TKA1 542 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 GPAT2Q6NUI2 795 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 MFSD7Q6UXD7 560 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.19□□□□□ -0.14
CCDC3-202ENST00000378839 ARFGAP1Q8N6T3 406 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 CCDC114Q96M63 670 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 NLRP4Q96MN2 994 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 TMEM109Q9BVC6 243 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 SDCBP2Q9H190 292 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 SIX4Q9UIU6 781 aa14.19□□□□□ -0.14
CCDC3-202ENST00000378839 SRRM3A6NNA2 597 aaPredicted RBP14.18□□□□□ -0.14
CCDC3-202ENST00000378839 KLRC2P26717 231 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 SSR1P43307 286 aaKnown RBP14.18□□□□□ -0.14
CCDC3-202ENST00000378839 CDH8P55286 799 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 SF3A3Q12874 501 aaKnown RBP eCLIP14.18□□□□□ -0.14
CCDC3-202ENST00000378839 SLMAPQ14BN4 828 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 DENND1BQ6P3S1 775 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 TSHZ1Q6ZSZ6 1077 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 HOOK3Q86VS8 718 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 KIAA0319LQ8IZA0 1049 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 SNF8Q96H20 258 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 SPATA33Q96N06 139 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 RUNDC3BQ96NL0 473 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 ZNF317Q96PQ6 595 aaPredicted RBP14.18□□□□□ -0.14
CCDC3-202ENST00000378839 XPO6Q96QU8 1125 aaKnown RBP14.18□□□□□ -0.14
CCDC3-202ENST00000378839 PPP1R16BQ96T49 567 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 FZD8Q9H461 694 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 PARVAQ9NVD7 372 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 EFNA5P52803 228 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 KAZNQ674X7 775 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 TADA2BQ86TJ2 420 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 EXOC3L1Q86VI1 746 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 CYP4X1Q8N118 509 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 ATL2Q8NHH9 583 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 SLITRK1Q96PX8 696 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 HMGXB4Q9UGU5 601 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 GPR25O00155 361 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 RGS16O15492 202 aaPredicted RBP14.18□□□□□ -0.14
CCDC3-202ENST00000378839 CXCL8P10145 99 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 ITIH2P19823 946 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 GBP1P32455 592 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms